期刊
METHODS
卷 48, 期 3, 页码 287-293出版社
ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.ymeth.2009.02.021
关键词
CLIP; UV cross-linking; Immunoprecipitation; RNA-protein binding; High-throughput sequencing
资金
- Medical Research Courtcil, UK
- European Research Council
- MRC [MC_U105185858] Funding Source: UKRI
- Medical Research Council [MC_U105185858] Funding Source: researchfish
UV cross-linking and immunoprecipitation assay (CLIP) can identify direct interaction sites between RNA-binding proteins and RNAs in vivo, and has been used to study several proteins in tissues and cell cultures. The main challenge of the method is to specifically amplify the low amount of isolated RNA. The current protocol is optimised for efficient RNA purification and ligation of barcoded RNA adapters, High-throughput sequencing of the multiplexed cDNA library allows for a comprehensive coverage of the target sequences. (C) 2009 Elsevier Inc. All rights reserved.
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