4.5 Article

Concordant chemical reaction networks and the Species-Reaction Graph

期刊

MATHEMATICAL BIOSCIENCES
卷 241, 期 1, 页码 1-23

出版社

ELSEVIER SCIENCE INC
DOI: 10.1016/j.mbs.2012.08.002

关键词

Reaction network; Bistability; Persistence; Concordant; Systems biology; Species-Reaction Graph

资金

  1. NSF [EF-1038394]
  2. NIH [1R01GM086881-01]
  3. Emerging Frontiers
  4. Direct For Biological Sciences [1038394] Funding Source: National Science Foundation

向作者/读者索取更多资源

In a recent paper it was shown that, for chemical reaction networks possessing a subtle structural property called concordance, dynamical behavior of a very circumscribed (and largely stable) kind is enforced, so long as the kinetics lies within the very broad and natural weakly monotonic class. In particular, multiple equilibria are precluded, as are degenerate positive equilibria. Moreover, under certain circumstances, also related to concordance, all real eigenvalues associated with a positive equilibrium are negative. Although concordance of a reaction network can be decided by readily available computational means, we show here that, when a nondegenerate network's Species-Reaction Graph satisfies certain mild conditions, concordance and its dynamical consequences are ensured. These conditions are weaker than earlier ones invoked, to establish kinetic system injectivity, which, in turn, is just one ramification of network concordance. Because the Species-Reaction Graph resembles pathway depictions often drawn by biochemists, results here expand the possibility of inferring significant dynamical information directly from standard biochemical reaction diagrams. (C) 2012 Elsevier Inc. All rights reserved.

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