4.5 Editorial Material

Improving the quality of genome, protein sequence, and taxonomy databases: A prerequisite for microbiome meta-omics 2.0

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

The MetaProteomeAnalyzer: A Powerful Open-Source Software Suite for Metaproteomics Data Analysis and Interpretation

Thilo Muth et al.

JOURNAL OF PROTEOME RESEARCH (2015)

Letter Biotechnology & Applied Microbiology

Multi-omic data analysis using Galaxy

Jorrit Boekel et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

Navigating through metaproteomics data: A logbook of database searching

Thilo Muth et al.

PROTEOMICS (2015)

Article Microbiology

A Proteome Quality Index

Jan Zaucha et al.

ENVIRONMENTAL MICROBIOLOGY (2015)

Article Biochemical Research Methods

Magnetic Immunoaffinity Enrichment for Selective Capture and MS/MS Analysis of N-Terminal-TMPP-Labeled Peptides

Celine Bland et al.

JOURNAL OF PROTEOME RESEARCH (2014)

Article Biochemical Research Methods

Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework

Pratik D. Jagtap et al.

JOURNAL OF PROTEOME RESEARCH (2014)

Article Biochemical Research Methods

Proteogenomics of Gammarus fossarum to Document the Reproductive System of Amphipods

Judith Trapp et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Review Biochemical Research Methods

N-terminomics and proteogenomics, getting off to a good start

Erica M. Hartmann et al.

PROTEOMICS (2014)

Article Genetics & Heredity

An Updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3

Adam R. Rivers et al.

STANDARDS IN GENOMIC SCIENCES (2014)

Article Biochemical Research Methods

A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences

Riccardo Percudani

BIOINFORMATICS AND BIOLOGY INSIGHTS (2013)

Review Pathology

Human Microbiome in Health and Disease

Kathryn J. Pflughoeft et al.

ANNUAL REVIEW OF PATHOLOGY: MECHANISMS OF DISEASE, VOL 7 (2012)

Article Biotechnology & Applied Microbiology

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade

Joseph A. Christie-Oleza et al.

BMC GENOMICS (2012)

Article Biochemical Research Methods

De novo derivation of proteomes from transcriptomes for transcript and protein identification

Vanessa C. Evans et al.

NATURE METHODS (2012)

Article Biotechnology & Applied Microbiology

Multiple DNA Extractions Coupled with Stable-Isotope Probing of Anthracene-Degrading Bacteria in Contaminated Soil

Maiysha D. Jones et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

Pablo Yarza et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2010)

Article Biochemical Research Methods

PLAST: parallel local alignment search tool for database comparison

Van Hoa Nguyen et al.

BMC BIOINFORMATICS (2009)

Article Genetics & Heredity

The genome of the cucumber, Cucumis sativus L.

Sanwen Huang et al.

NATURE GENETICS (2009)

Review Microbiology

Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution

Ilana Zilber-Rosenberg et al.

FEMS MICROBIOLOGY REVIEWS (2008)

Article Biotechnology & Applied Microbiology

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

KE Ashelford et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Serendipitous discovery of Wolbachia genomes in multiple Drosophila species

SL Salzberg et al.

GENOME BIOLOGY (2005)

Article Multidisciplinary Sciences

Environmental genome shotgun sequencing of the Sargasso Sea

JC Venter et al.

SCIENCE (2004)