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Daehwan Kim et al.
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Niyaz Yoosuf et al.
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Jared T. Simpson et al.
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Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli
L. Arike et al.
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Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
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Ruibang Luo et al.
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Defne Arslan et al.
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James K. Bonfield et al.
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Vaccinia-like cytoplasmic replication of the giant Mimivirus
Yael Mutsafi et al.
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Matthias G. Fischer et al.
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Jean-Michel Claverie et al.
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A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa
Veronique Dupierris et al.
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Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms
Mickael Boyer et al.
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Gang Wu et al.
CURRENT MICROBIOLOGY (2008)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Brandi L. Cantarel et al.
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Viral proteomics
Karen L. Maxwell et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2007)
Gepard: a rapid and sensitive tool for creating dotplots on genome scale
Jan Krumsiek et al.
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Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products
Patricia Renesto et al.
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Mario Stanke et al.
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Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
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Gene identification in novel eukaryotic genomes by self-training algorithm
A Lomsadze et al.
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CD-Search: protein domain annotations on the fly
A Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2004)
The 1.2-megabase genome sequence of mimivirus
D Raoult et al.
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Endoparasite KC5/2 encloses large areas of sol-like cytoplasm within Acanthamoebae.: Normal behavior or aberration?
R Michel et al.
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The COG database: an updated version includes eukaryotes
RL Tatusov et al.
BMC BIOINFORMATICS (2003)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
YH Yang et al.
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CDD: a database of conserved domain alignments with links to domain three-dimensional structure
A Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2002)
FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
JY Shi et al.
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GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
J Besemer et al.
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