4.8 Article

Probing Slow Protein Dynamics by Adiabatic R1ρ and R2ρ NMR Experiments

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JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
卷 132, 期 29, 页码 9979-9981

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AMER CHEMICAL SOC
DOI: 10.1021/ja1038787

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  1. NIH [GM64742, HL80081, GM072701, NIH P41 RR008079, R01NS061866, R21NS059813]

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Slow mu s/Ms dynamics involved in protein folding, binding, catalysis, and allostery are currently detected using NMR dispersion experiments such as CPMG (Carr-Purcell-Meiboom-Gill) or spin-lock R-1 rho. In these methods, protein dynamics are obtained by analyzing relaxation dispersion curves obtained from either changing the time spacing between 180 degrees pulses or by changing the effective spin-locking field strength. In this Communication, we introduce a new method to induce a dispersion of relaxation rates. Our approach relies on altering the shape of the adiabatic full passage pulse and is conceptually different from existing approaches. By changing the nature of the adiabatic radiofrequency irradiation, we are able to obtain rotating frame R-1 rho and R-2 rho dispersion curves that are sensitive to slow mu s/ms protein dynamics (demonstrated with ubiquitin). The strengths of this method are to (a) extend the dynamic range of the relaxation dispersion analysis, (b) avoid the need for multiple magnetic field strengths to extract dynamic parameters, (c) measure accurate relaxation rates that are independent of frequency offset, and (d) reduce the stress to NMR hardware (e.g., cryoprobes).

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