期刊
JOURNAL OF PROTEOMICS
卷 88, 期 -, 页码 104-108出版社
ELSEVIER SCIENCE BV
DOI: 10.1016/j.jprot.2012.12.026
关键词
Proteomics; Bioinformatics; Mass spectrometry; Cloud computing; Search algorithms
资金
- Carnegie Corporation
- Ghent University
- PRIME-XS project [262067]
- European Union
We here present the ProteoCloud pipeline, a freely available, full-featured cloud-based platform to perform computationally intensive, exhaustive searches in a cloud environment using five different peptide identification algorithms. ProteoCloud is entirely open source, and is built around an easy to use and cross-platform software client with a rich graphical user interface. This client allows full control of the number of cloud instances to initiate and of the spectra to assign for identification. It also enables the user to track progress, and to visualize and interpret the results in detail. Source code, binaries and documentation are all available at http://proteocloud.googlecode.com. This article is part of a Special Issue entitled: New Horizons and Applications for Proteomics [EuPA 2012]. (C) 2013 Elsevier B.V. All rights reserved.
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