相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Fungal genome sequencing: basic biology to biotechnology
Krishna Kant Sharma
CRITICAL REVIEWS IN BIOTECHNOLOGY (2016)
The expanding epigenetic landscape of non-model organisms
Roberto Bonasio
JOURNAL OF EXPERIMENTAL BIOLOGY (2015)
The VELVET Complex in the Gray Mold Fungus Botrytis cinerea: Impact of BcLAE1 on Differentiation, Secondary Metabolism, and Virulence
Julia Schumacher et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2015)
One Juliet and four Romeos: VeA and its methyltransferases
Oezlem Sarikaya-Bayram et al.
Frontiers in Microbiology (2015)
The role of Aspergillus flavus veA in the production of extracellular proteins during growth on starch substrates
Rocio M. Duran et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)
Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production
Mari Hakkinen et al.
BIOTECHNOLOGY FOR BIOFUELS (2014)
The transcriptome of lae1 mutants of Trichoderma reesei cultivated at constant growth rates reveals new targets of LAE1 function
Erzsebet Fekete et al.
BMC GENOMICS (2014)
Isolation and identification of novel propoxyphenyl thiosildenafil found in natural health food product
Kyoung Moon Han et al.
FOOD ADDITIVES AND CONTAMINANTS PART A-CHEMISTRY ANALYSIS CONTROL EXPOSURE & RISK ASSESSMENT (2014)
Epigenetic modifiers alter the secondary metabolite composition of a plant endophytic fungus, Pestalotiopsis crassiuscula obtained from the leaves of Fragaria chiloensis
Xiao-Long Yang et al.
JOURNAL OF ASIAN NATURAL PRODUCTS RESEARCH (2014)
Aspergillus oryzae-based cell factory for direct kojic acid production from cellulose
Ryosuke Yamada et al.
MICROBIAL CELL FACTORIES (2014)
Natural Antisense Transcripts and Long Non-Coding RNA in Neurospora crassa
Yamini Arthanari et al.
PLOS ONE (2014)
The VELVET A Orthologue VEL1 of Trichoderma reesei Regulates Fungal Development and Is Essential for Cellulase Gene Expression
Razieh Karimi Aghcheh et al.
PLOS ONE (2014)
High-quality genome (re) assembly using chromosomal contact data
Herve Marie-Nelly et al.
NATURE COMMUNICATIONS (2014)
A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum
Pao-Yang Chen et al.
GIGASCIENCE (2014)
Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content
Barbara Montanini et al.
GENOME BIOLOGY (2014)
Substrate-Induced Transcriptional Activation of the MoCel7C Cellulase Gene Is Associated with Methylation of Histone H3 at Lysine 4 in the Rice Blast Fungus Magnaporthe oryzae
Ba Van Vu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
An epigenetic modifier enhances the production of anti-diabetic and anti-inflammatory sesquiterpenoids from Aspergillus sydowii
Yu-Ming Chung et al.
BIOORGANIC & MEDICINAL CHEMISTRY (2013)
Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger
Laure Ries et al.
BMC GENOMICS (2013)
Trichoderma reesei Histone Acetyltransferase Gcn5 Regulates Fungal Growth, Conidiation, and Cellulase Gene Expression
Qi Xin et al.
CURRENT MICROBIOLOGY (2013)
Members of the Penicillium chrysogenum Velvet Complex Play Functionally Opposing Roles in the Regulation of Penicillin Biosynthesis and Conidiation
Katarina Kopke et al.
EUKARYOTIC CELL (2013)
Is the Fungus Magnaporthe Losing DNA Methylation?
Ken-ichi Ikeda et al.
GENETICS (2013)
A Novel Automethylation Reaction in the Aspergillus nidulans LaeA Protein Generates S-Methylmethionine
Alexander N. Patananan et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Strain Improvement by Overexpression of the laeA Gene in Monascus pilosus for the Production of Monascus-Fermented Rice
Sang Sub Lee et al.
JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY (2013)
Interplay of the fungal sumoylation network for control of multicellular development
Rebekka Harting et al.
MOLECULAR MICROBIOLOGY (2013)
Sexual reproduction and mating-type-mediated strain development in the penicillin-producing fungus Penicillium chrysogenum
Julia Boehm et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Functional Analyses of Trichoderma reesei LAE1 Reveal Conserved and Contrasting Roles of This Regulator
Razieh Karimi-Aghcheh et al.
G3-GENES GENOMES GENETICS (2013)
The Fusarium graminearum Histone H3 K27 Methyltransferase KMT6 Regulates Development and Expression of Secondary Metabolite Gene Clusters
Lanelle R. Connolly et al.
PLOS GENETICS (2013)
Small Chemical Chromatin Effectors Alter Secondary Metabolite Production in Aspergillus clavatus
Christoph Zutz et al.
TOXINS (2013)
Widespread Existence of Cytosine Methylation in Yeast DNA Measured by Gas Chromatography/Mass Spectrometry
Yang Tang et al.
ANALYTICAL CHEMISTRY (2012)
RNA-dependent inhibition of ribonucleotide reductase is a major pathway for 5-azacytidine activity in acute myeloid leukemia
Josephine Aimiuwu et al.
BLOOD (2012)
Identification and characterization of Penicillium citrinum VeA and LaeA as global regulators for ML-236B production
Satoshi Baba et al.
CURRENT GENETICS (2012)
Chromatin and Transcription in Yeast
Oliver J. Rando et al.
GENETICS (2012)
Bioorganic Compounds Produced by the Fungus Monascus and their Use in Health Sciences and Medicine
Megumi Kuba-Miyara et al.
MINI-REVIEWS IN ORGANIC CHEMISTRY (2012)
How to Activate a Gene: Decap Its Associated Noncoding RNA
Madhuvanthi Ramaiah et al.
MOLECULAR CELL (2012)
Decapping of Long Noncoding RNAs Regulates Inducible Genes
Sarah Geisler et al.
MOLECULAR CELL (2012)
Jack of all nectars, master of most: DNA methylation and the epigenetic basis of niche width in a flower-living yeast
C. M. Herrera et al.
MOLECULAR ECOLOGY (2012)
Natural antisense transcripts in fungi
Michael E. Donaldson et al.
MOLECULAR MICROBIOLOGY (2012)
The putative protein methyltransferase LAE1 controls cellulase gene expression in Trichoderma reesei
Bernhard Seiboth et al.
MOLECULAR MICROBIOLOGY (2012)
Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation
Shinji Honda et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Impact of Velvet Complex on Transcriptome and Penicillin G Production in Glucose-Limited Chemostat Cultures of a β-Lactam High-Producing Penicillium chrysogenum Strain
Tania Veiga et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
Candida albicans Dicer (CaDcr1) is required for efficient ribosomal and spliceosomal RNA maturation
Douglas A. Bernstein et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing
Stephane Delmas et al.
PLOS GENETICS (2012)
Coordination of secondary metabolism and development in fungi: the velvet family of regulatory proteins
Oezguer Bayram et al.
FEMS MICROBIOLOGY REVIEWS (2012)
Characterization of an Autoinducer of Penicillin Biosynthesis in Penicillium chrysogenum
Jorge Martin et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Impact of the Penicillium chrysogenum genome on industrial production of metabolites
Marco Alexander van den Berg
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2011)
Aspergillus oryzae laeA Regulates Kojic Acid Synthesis Genes
Ken Oda et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2011)
RNA Interference in Fungi: Pathways, Functions, and Applications
Yunkun Dang et al.
EUKARYOTIC CELL (2011)
Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation
Hao Wu et al.
GENES & DEVELOPMENT (2011)
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Molecular Mechanisms of Long Noncoding RNAs
Kevin C. Wang et al.
MOLECULAR CELL (2011)
CHD1 Remodels Chromatin and Influences Transient DNA Methylation at the Clock Gene frequency
William J. Belden et al.
PLOS GENETICS (2011)
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
Christian P. Kubicek et al.
GENOME BIOLOGY (2011)
Two Components of a velvet-Like Complex Control Hyphal Morphogenesis, Conidiophore Development, and Penicillin Biosynthesis in Penicillium chrysogenum
Birgit Hoff et al.
EUKARYOTIC CELL (2010)
Involvement of transposon-like elements in penicillin gene cluster regulation
Mona Shaaban et al.
FUNGAL GENETICS AND BIOLOGY (2010)
Characterizing the role of RNA silencing components in Cryptococcus neoformans
Guilhem Janbon et al.
FUNGAL GENETICS AND BIOLOGY (2010)
Epigenetics and transgenerational transfer: a physiological perspective
D. H. Ho et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2010)
Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi
Heng-Chi Lee et al.
MOLECULAR CELL (2010)
Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans
Yazmid Reyes-Dominguez et al.
MOLECULAR MICROBIOLOGY (2010)
5-methylcytosine in RNA: detection, enzymatic formation and biological functions
Yuri Motorin et al.
NUCLEIC ACIDS RESEARCH (2010)
Histones: Annotating Chromatin
Eric I. Campos et al.
ANNUAL REVIEW OF GENETICS (2009)
The global regulator LaeA controls penicillin biosynthesis, pigmentation and sporulation, but not roquefortine C synthesis in Penicillium chrysogenum
Katarina Kosalkova et al.
BIOCHIMIE (2009)
New improvements for lignocellulosic ethanol
Antoine Margeot et al.
CURRENT OPINION IN BIOTECHNOLOGY (2009)
Perspectives and new directions for the production of bioethanol using consolidated bioprocessing of lignocellulose
Qi Xu et al.
CURRENT OPINION IN BIOTECHNOLOGY (2009)
A Single dicer Gene Is Required for Efficient Gene Silencing Associated with Two Classes of Small Antisense RNAs in Mucor circinelloides
Juan P. de Haro et al.
EUKARYOTIC CELL (2009)
Characterization of Chromosome Ends in the Filamentous Fungus Neurospora crassa
Cheng Wu et al.
GENETICS (2009)
Fungal Bioconversion of Lignocellulosic Residues; Opportunities & Perspectives
Mehdi Dashtban et al.
INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES (2009)
Chromatin-level regulation of biosynthetic gene clusters
Jin Woo Bok et al.
NATURE CHEMICAL BIOLOGY (2009)
Small silencing RNAs: an expanding universe
Megha Ghildiyal et al.
NATURE REVIEWS GENETICS (2009)
Evidence for Dicer-dependent RNA interference in the industrial penicillin producer Penicillium chrysogenum
Danielle Janus et al.
MICROBIOLOGY-SGM (2009)
Aspects on evolution of fungal beta-lactam biosynthesis gene clusters and recruitment of trans-acting factors
Axel A. Brakhage et al.
PHYTOCHEMISTRY (2009)
Epigenetics and complex disease: From etiology to new therapeutics
Carolyn Ptak et al.
ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY (2008)
Repeat induced point mutation in two asexual fungi, Aspergillus niger and Penicillium chrysogenum
Ilka Braumann et al.
CURRENT GENETICS (2008)
Roles of the Aspergillus nidulans homologues of Tup1 and Ssn6 in chromatin structure and cell viability
Irene Garcia et al.
FEMS MICROBIOLOGY LETTERS (2008)
DCL-1 colocalizes with other components of the MSUD machinery and is required for silencing
William G. Alexander et al.
FUNGAL GENETICS AND BIOLOGY (2008)
RNA-silencing in Penicillium chrysogenum and Acremonium chrysogenum: Validation studies using β-lactam genes expression
Ricardo V. Ullan et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2008)
Direct interaction between DNA methyltransferase DIM-2 and HP1 is required for DNA methylation in Neurospora crassa
Shinji Honda et al.
MOLECULAR AND CELLULAR BIOLOGY (2008)
A ncRNA Modulates Histone Modification and mRNA Induction in the Yeast GAL Gene Cluster
Jonathan Houseley et al.
MOLECULAR CELL (2008)
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
Diego Martinez et al.
NATURE BIOTECHNOLOGY (2008)
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
Marco A. van den Berg et al.
NATURE BIOTECHNOLOGY (2008)
VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism
Oezguer Bayram et al.
SCIENCE (2008)
Histone modifications and chromatin dynamics: a focus on filamentous fungi
Gerald Brosch et al.
FEMS MICROBIOLOGY REVIEWS (2008)
Mutants defective in a Mucor circinelloides dicer-like gene are not compromised in siRNA silencing but display developmental defects
Francisco E. Nicolas et al.
FUNGAL GENETICS AND BIOLOGY (2007)
A homologue of the Aspergillus velvet gene regulates both cephalosporin C biosynthesis and hyphal fragmentation in Acremonium chrysogenum
Jacqueline Dreyer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH
William J. Belden et al.
MOLECULAR CELL (2007)
Genomic patterns of DNA methylation: targets and function of an epigenetic mark
Michael Weber et al.
CURRENT OPINION IN CELL BIOLOGY (2007)
The Aspergillus nidulans rcoA gene is required for veA-dependent sexual development
Richard B. Todd et al.
GENETICS (2006)
Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications
D Nathan et al.
GENES & DEVELOPMENT (2006)
Complex loci in human and mouse genomes
Par G. Engstrom et al.
PLOS GENETICS (2006)
Antisense transcription in the mammalian transcriptome
S Katayama et al.
SCIENCE (2005)
Cross-talking histones: implications for the regulation of gene expression and DNA repair
A Wood et al.
BIOCHEMISTRY AND CELL BIOLOGY (2005)
Methylation of histone H3 lysine 36 is required for normal development in Neurospora crassa
KK Adhvaryu et al.
EUKARYOTIC CELL (2005)
Acetylation in histone H3 globular domain regulates gene expression in yeast
F Xu et al.
CELL (2005)
Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana
XJ Wang et al.
GENOME BIOLOGY (2005)
Open reading frames provide a rich pool of potential natural antisense transcripts in fungal genomes
S Steigele et al.
NUCLEIC ACIDS RESEARCH (2005)
LaeA, a regulator of secondary metabolism in Aspergillus spp.
JW Bok et al.
EUKARYOTIC CELL (2004)
HP1 is essential for DNA methylation in Neurospora
M Freitag et al.
MOLECULAR CELL (2004)
MicroRNAs: Genomics, biogenesis, mechanism, and function
DP Bartel
CELL (2004)
One of the two Dicer-like proteins in the filamentous fungi Magnaporthe oryzae genome is responsible for hairpin RNA-triggered RNA silencing and related small interfering RNA accumulation
N Kadotani et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Compactin - a review
R Chakravarti et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2004)
Histone sumoylation is associated with transcriptional repression
Y Shilo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Nucleosome transactions on the Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2 associated with cellulase induction
S Zeilinger et al.
MOLECULAR GENETICS AND GENOMICS (2003)
Synthesis of signals for De Novo DNA methylation in Neurospora crassa
H Tamaru et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
The Paf1 complex is required for histone h3 methylation by COMPASS and Dot1p: Linking transcriptional elongation to histone methylation
NJ Krogan et al.
MOLECULAR CELL (2003)
A uniform system for microRNA annotation
V Ambros et al.
RNA (2003)
Role for antisense RNA in regulating circadian clock function in Neurospora crassa
C Kramer et al.
NATURE (2003)
RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast
IM Hall et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
A cytosine methyltransferase homologue is essential for repeat-induced point mutation in Neurospora crassa
M Freitag et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Hydrolysis of lignocellulosic materials for ethanol production: a review
Y Sun et al.
BIORESOURCE TECHNOLOGY (2002)
Meiotic silencing by unpaired DNA
PKT Shiu et al.
CELL (2001)
A histone H3 methyltransferase controls DNA methylation in Neurospora crassa
H Tamaru et al.
NATURE (2001)
Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries
K Noma et al.
SCIENCE (2001)
Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin
N Suka et al.
MOLECULAR CELL (2001)
dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora
E Kouzminova et al.
EMBO JOURNAL (2001)
Acetylation of histones and transcription-related factors
DE Sterner et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)
Rad6-dependent ubiquitination of histone H2B in yeast
K Robzyk et al.
SCIENCE (2000)
The language of covalent histone modifications
BD Strahl et al.
NATURE (2000)
分享论文
