4.4 Article

Translating network models to parallel hardware in NEURON

期刊

JOURNAL OF NEUROSCIENCE METHODS
卷 169, 期 2, 页码 425-455

出版社

ELSEVIER SCIENCE BV
DOI: 10.1016/j.jneumeth.2007.09.010

关键词

computational neuroscience; network model; simulation; NEURON simulation environment; serial computation; parallel computation; multiprocessor; parallel supercomputer

资金

  1. NINDS NIH HHS [R01 NS011613-31, R01 NS011613] Funding Source: Medline

向作者/读者索取更多资源

The increasing complexity of network models poses a growing computational burden. At the same time, computational neuroscientists are finding it easier to access parallel hardware, such as multiprocessor personal computers, workstation clusters, and massively parallel supercomputers. The practical question is how to move a working network model from a single processor to parallel hardware. Here we show how to make this transition for models implemented with NEURON, in such a way that the final result will run and produce numerically identical results on either serial or parallel hardware. This allows users to develop and debug models on readily available local resources, then run their code without modification on a parallel supercomputer. (c) 2007 Elsevier B.V. All rights reserved.

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