4.6 Review

The analysis of clonal expansions in normal and autoimmune B cell repertoires

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Immunology

Class-switched memory B cells remodel BCRs within secondary germinal centers

Louise J. McHeyzer-Williams et al.

NATURE IMMUNOLOGY (2015)

Article Biology

The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales

Gur Yaari et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Biochemical Research Methods

Correcting Illumina data

Michael Molnar et al.

BRIEFINGS IN BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire

Brandon J. DeKosky et al.

NATURE MEDICINE (2015)

Article Chemistry, Analytical

Proteomic Identification of Monoclonal Antibodies from Serum

Daniel R. Boutz et al.

ANALYTICAL CHEMISTRY (2014)

Article Biochemical Research Methods

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires

Jason A. Vander Heiden et al.

BIOINFORMATICS (2014)

Article Immunology

Single-cell based high-throughput sequencing of full-length immunoglobulin heavy and light chain genes

Christian E. Busse et al.

EUROPEAN JOURNAL OF IMMUNOLOGY (2014)

Review Biotechnology & Applied Microbiology

The promise and challenge of high-throughput sequencing of the antibody repertoire

George Georgiou et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemical Research Methods

Towards error-free profiling of immune repertoires

Mikhail Shugay et al.

NATURE METHODS (2014)

Article Multidisciplinary Sciences

High-resolution antibody dynamics of vaccine-induced immune responses

Uri Laserson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Diversity and clonal selection in the human T-cell repertoire

Qian Qi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Cell Biology

B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes

Joel N. H. Stern et al.

SCIENCE TRANSLATIONAL MEDICINE (2014)

Article Immunology

Differences in the composition of the human antibody repertoire by B cell subsets in the blood

Eva Szymanska Mroczek et al.

FRONTIERS IN IMMUNOLOGY (2014)

Article Immunology

Trials and tribulations with VH replacement

Wenzhao Meng et al.

FRONTIERS IN IMMUNOLOGY (2014)

Article Biochemical Research Methods

Sequencing error correction without a reference genome

Julie A. Sleep et al.

BMC BIOINFORMATICS (2013)

Article Oncology

The Significance of Stereotyped B-Cell Receptors in Chronic Lymphocytic Leukemia

Nikos Darzentas et al.

HEMATOLOGY-ONCOLOGY CLINICS OF NORTH AMERICA (2013)

Article Biochemistry & Molecular Biology

IgBLAST: an immunoglobulin variable domain sequence analysis tool

Jian Ye et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Genetic measurement of memory B-cell recall using antibody repertoire sequencing

Christopher Vollmers et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains

Jiang Zhu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Using synthetic templates to design an unbiased multiplex PCR assay

Christopher S. Carlson et al.

NATURE COMMUNICATIONS (2013)

Article Biochemical Research Methods

Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data

Lauren M. Bragg et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Review Immunology

Germinal center selection and the development of memory B and plasma cells

Mark J. Shlomchik et al.

IMMUNOLOGICAL REVIEWS (2012)

Article Immunology

Secreted human Ro52 autoantibody proteomes express a restricted set of public clonotypes

Georgia Arentz et al.

JOURNAL OF AUTOIMMUNITY (2012)

Article Biochemistry & Molecular Biology

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

Gur Yaari et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Statistical inference of the generation probability of T-cell receptors from sequence repertoires

Anand Murugan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Immunology

Age-related changes in human peripheral blood IGH repertoire following vaccination

Yu-Chang Bryan Wu et al.

FRONTIERS IN IMMUNOLOGY (2012)

Article Immunology

Selection of Individual VH Genes Occurs at the Pro-B to Pre-B Cell Transition

Wenzhao Meng et al.

JOURNAL OF IMMUNOLOGY (2011)

Article Multidisciplinary Sciences

High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment

Aaron C. Logan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Origins of Anti-DNA Antibodies and Their Implications for B-Cell Tolerancea

MARKO Z. RADIC et al.

Annals of the New York Academy of Sciences (2010)

Article Biochemical Research Methods

SoDA2: a Hidden Markov Model approach for identification of immunoglobulin rearrangements

Supriya Munshaw et al.

BIOINFORMATICS (2010)

Article Hematology

Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma

Silvia Zibellini et al.

HAEMATOLOGICA-THE HEMATOLOGY JOURNAL (2010)

Article Biochemistry & Molecular Biology

Anti-nuclear antibody reactivity in lupus may be partly hard-wired into the primary B-cell repertoire

Sooghee Chang et al.

MOLECULAR IMMUNOLOGY (2009)

Article Biochemistry & Molecular Biology

Somatic hypermutation in peritoneal B1b cells

Bishnudeo Roy et al.

MOLECULAR IMMUNOLOGY (2009)

Article Multidisciplinary Sciences

Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire

Jacob Glanville et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemical Research Methods

Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies

Xiaojing Wang et al.

BMC BIOINFORMATICS (2008)

Article Immunology

Improved methods for detecting selection by mutation analysis of Ig V region sequences

Uri Hershberg et al.

INTERNATIONAL IMMUNOLOGY (2008)

Article Biochemical Research Methods

Efficient generation of monoclonal antibodies from single human B cells by single cell RT-PCR and expression vector cloning

Thomas Tiller et al.

JOURNAL OF IMMUNOLOGICAL METHODS (2008)

Article Biochemical Research Methods

IgTree©:: Creating immunoglobulin variable region gene lineage trees

Michal Barak et al.

JOURNAL OF IMMUNOLOGICAL METHODS (2008)

Article Multidisciplinary Sciences

How the thymus designs antigen-specific and self-tolerant T cell receptor sequences

Andrej Kosmrlj et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

Methods for comparing the diversity of samples of the T cell receptor repertoire

Vanessa Venturi et al.

JOURNAL OF IMMUNOLOGICAL METHODS (2007)

Review Biochemistry & Molecular Biology

Statistical analysis of CDR3 length distributions for the assessment of T and B cell repertoire biases

Patrick Miqueu et al.

MOLECULAR IMMUNOLOGY (2007)

Review Immunology

Toll-like receptors in systemic autoimmune disease

Ann Marshak-Rothstein

NATURE REVIEWS IMMUNOLOGY (2006)

Review Cell Biology

Genes, pathways and checkpoints in lymphocytedevelopment and homeostasis

L Miosge et al.

IMMUNOLOGY AND CELL BIOLOGY (2005)

Article Multidisciplinary Sciences

Predominant autoantibody production by early human B cell precursors

H Wardemann et al.

SCIENCE (2003)

Article Immunology

Estimating hypermutation rates from clonal tree data

SH Kleinstein et al.

JOURNAL OF IMMUNOLOGY (2003)

Article Multidisciplinary Sciences

Human chronic lymphocytic leukemia modeled in mouse by targeted TCL1 expression

R Bichi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Structural basis for autoantibody recognition of phosphatidylserine-β2 glycoprotein I and apoptotic cells

BA Cocca et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Medicine, Research & Experimental

Natural antibodies with the T15 idiotype may act in atherosclerosis, apoptotic clearance, and protective immunity

PX Shaw et al.

JOURNAL OF CLINICAL INVESTIGATION (2000)

Article Multidisciplinary Sciences

A B-cell receptor-specific selection step governs immature to mature B cell differentiation

MH Levine et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)