相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Improved gene tree error correction in the presence of horizontal gene transfer
Mukul S. Bansal et al.
BIOINFORMATICS (2015)
Lateral gene transfers and the origins of the eukaryote proteome: a view from microbial parasites
Robert P. Hirt et al.
CURRENT OPINION IN MICROBIOLOGY (2015)
Joint amalgamation of most parsimonious reconciled gene trees
Celine Scornavacca et al.
BIOINFORMATICS (2015)
Toward More Accurate Ancestral Protein Genotype-Phenotype Reconstructions with the Use of Species Tree-Aware Gene Trees
Mathieu Groussin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts
Laszlo G. Nagy et al.
NATURE COMMUNICATIONS (2014)
Systematic inference of highways of horizontal gene transfer in prokaryotes
Mukul S. Bansal et al.
BIOINFORMATICS (2013)
Genome-scale coestimation of species and gene trees
Bastien Boussau et al.
GENOME RESEARCH (2013)
Lateral Gene Transfer from the Dead
Gergely J. Szoellosi et al.
SYSTEMATIC BIOLOGY (2013)
Efficient Exploration of the Space of Reconciled Gene Trees
Gergely J. Szoellosi et al.
SYSTEMATIC BIOLOGY (2013)
The function and evolution of the Aspergillus genome
John G. Gibbons et al.
TRENDS IN MICROBIOLOGY (2013)
DLRS: gene tree evolution in light of a species tree
Joel Sjostrand et al.
BIOINFORMATICS (2012)
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
Gergely J. Szollosi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
Dimitrios Floudas et al.
SCIENCE (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
Genome Evolution: Horizontal Movements in the Fungi
Thomas A. Richards
CURRENT BIOLOGY (2011)
Horizontal Transfer of a Large and Highly Toxic Secondary Metabolic Gene Cluster between Fungi
Jason C. Slot et al.
CURRENT BIOLOGY (2011)
A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction
Matthew D. Rasmussen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Rapid evolutionary innovation during an Archaean genetic expansion
Lawrence A. David et al.
NATURE (2011)
The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi
Daniel C. Eastwood et al.
SCIENCE (2011)
Gene transfer into the fungi
Thomas A. Richards et al.
Fungal Biology Reviews (2011)
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
Miklos Csuroes
BIOINFORMATICS (2010)
Inference and Characterization of Horizontally Transferred Gene Families Using Stochastic Mapping
Ofir Cohen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Bayesian Inference of Species Trees from Multilocus Data
Joseph Heled et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
Nicolas Lartillot et al.
BIOINFORMATICS (2009)
Databases of homologous gene families for comparative genomics
Simon Penel et al.
BMC BIOINFORMATICS (2009)
Simultaneous Bayesian gene tree reconstruction and reconciliation analysis
Oerjan Akerborg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
An improved general amino acid replacement matrix
Si Quang Le et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Late Archean biospheric oxygenation and atmospheric evolution
Alan J. Kaufman et al.
SCIENCE (2007)
Natural history and evolutionary principles of gene duplication in fungi
Ilan Wapinski et al.
NATURE (2007)
Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution
Tal Dagan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Species trees from gene trees: Reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions
Liang Liu et al.
SYSTEMATIC BIOLOGY (2007)
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
David A. Fitzpatrick et al.
BMC EVOLUTIONARY BIOLOGY (2006)
Relaxed phylogenetics and dating with confidence
Alexei J. Drummond et al.
PLOS BIOLOGY (2006)
The evolutionary diversification of cyanobacteria: Molecular-phylogenetic and paleontological perspectives
A Tomitani et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Highways of gene sharing in prokaryotes
RG Beiko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
A Stamatakis et al.
BIOINFORMATICS (2005)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
Computational inference of scenarios for α-proteobacterial genome evolution
B Boussau et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
N Lartillot et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Bayesian gene/species tree reconciliation and orthology analysis using MCMC
Lars Arvestad et al.
BIOINFORMATICS (2003)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)
分享论文
