4.8 Article

The EMBL-EBI bioinformatics web and programmatic tools framework

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Content discovery and retrieval services at the European Nucleotide Archive

Nicole Silvester et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

The InterPro protein families database: the classification resource after 15 years

Alex Mitchell et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Ensembl 2015

Fiona Cunningham et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

InterProScan 5: genome-scale protein function classification

Philip Jones et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Ensembl Genomes 2013: scaling up access to genome-wide data

Paul Julian Kersey et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

The European Bioinformatics Institute's data resources 2014

Catherine Brooksbank et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Pfam: the protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemical Research Methods

BioJS: an open source JavaScript framework for biological data visualization

John Gomez et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Infernal 1.1: 100-fold faster RNA homology searches

Eric P. Nawrocki et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Rfam 11.0: 10 years of RNA families

Sarah W. Burge et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

Jaina Mistry et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Analysis Tool Web Services from the EMBL-EBI

Hamish McWilliam et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemical Research Methods

PSI-Search: iterative HOE-reduced profile SSEARCH searching

Weizhong Li et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

Fabian Sievers et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Biochemical Research Methods

MapMi: automated mapping of microRNA loci

Jose Afonso Guerra-Assuncao et al.

BMC BIOINFORMATICS (2010)

Article Biochemical Research Methods

Fast and efficient searching of biological data resources-using EB-eye

Franck Valentin et al.

BRIEFINGS IN BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

A new bioinformatics analysis tools framework at EMBL-EBI

Mickael Goujon et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

Timo Lassmann et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

R-Coffee: a method for multiple alignment of non-coding RNA

Andreas Wilm et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

Clustal W and clustal X version 2.0

M. A. Larkin et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

InterProScan: protein domains identifier

E Quevillon et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

The International Protein Index: An integrated database for proteomics experiments

PJ Kersey et al.

PROTEOMICS (2004)

Article Biochemistry & Molecular Biology

HGVbase: a curated resource describing human DNA variation and phenotype relationships

D Fredman et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

WU-Blast2 server at the European Bioinformatics Institute

R Lopez et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches

JD Thompson et al.

NUCLEIC ACIDS RESEARCH (2000)

Article Biochemical Research Methods

DaliLite workbench for protein structure comparison

L Holm et al.

BIOINFORMATICS (2000)