4.8 Article

Nucleosomes undergo slow spontaneous gaping

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Asymmetric Unwrapping of Nucleosomes under Tension Directed by DNA Local Flexibility

Thuy T. M. Ngo et al.

Article Chemistry, Physical

A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment

Christopher Maffeo et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)

Article Biochemical Research Methods

Histone- and DNA sequence-dependent stability of nucleosomes studied by single-pair FRET

Katalin Toth et al.

CYTOMETRY PART A (2013)

Article Multidisciplinary Sciences

Transcription Under Torsion

Jie Ma et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss

Maxim Y. Sheinin et al.

NATURE COMMUNICATIONS (2013)

Article Biochemistry & Molecular Biology

Nucleosomal Elements that Control the Topography of the Barrier to Transcription

Lacramioara Bintu et al.

Article Biochemistry & Molecular Biology

Kinetics and Thermodynamics of Phenotype: Unwinding and Rewinding the Nucleosome

Andrew H. Mack et al.

JOURNAL OF MOLECULAR BIOLOGY (2012)

Article Chemistry, Multidisciplinary

Effects of DNA Methylation on the Structure of Nucleosomes

Ju Yeon Lee et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Article Biochemical Research Methods

A toolkit and benchmark study for FRET-restrained high-precision structural modeling

Stanislav Kalinin et al.

NATURE METHODS (2012)

Review Cell Biology

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Karolin Luger et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Regulation of the nucleosome unwrapping rate controls DNA accessibility

Justin A. North et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Dynamics of Nucleosomes Assessed with Time-Lapse High-Speed Atomic Force Microscopy

Atsushi Miyagi et al.

BIOCHEMISTRY (2011)

Article Biochemistry & Molecular Biology

Dynamics of Nucleosome Invasion by DNA Binding Proteins

Hannah S. Tims et al.

JOURNAL OF MOLECULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes

Lacramioara Bintu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Nucleosome accessibility governed by the dimer/tetramer interface

Vera Boehm et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Tension-dependent structural deformation alters single-molecule transition kinetics

B. Sudhanshu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomes

Mekonnen Lemma Dechassa et al.

NATURE COMMUNICATIONS (2011)

Review Biochemistry & Molecular Biology

Single-pair FRET experiments on nucleosome conformational dynamics

Ruth Buning et al.

BIOCHIMIE (2010)

Article Multidisciplinary Sciences

Structure of RCC1 chromatin factor bound to the nucleosome core particle

Ravindra D. Makde et al.

NATURE (2010)

Article Biophysics

Hidden Markov Analysis of Nucleosome Unwrapping Under Force

M. Kruithof et al.

BIOPHYSICAL JOURNAL (2009)

Article Biochemistry & Molecular Biology

Single-Molecule Fluorescence Studies of Nucleosome Dynamics

K. Gurunathan et al.

CURRENT PHARMACEUTICAL BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

Nucleosome Dynamics as Studied by Single-pair Fluorescence Resonance Energy Transfer: A Reevaluation

Miroslav Tomschik et al.

JOURNAL OF FLUORESCENCE (2009)

Article Biochemistry & Molecular Biology

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome

Michael A. Hall et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Article Multidisciplinary Sciences

Nucleosome disassembly intermediates characterized by single-molecule FRET

Alexander Gansen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Nucleosomal Fluctuations Govern the Transcription Dynamics of RNA Polymerase II

Courtney Hodges et al.

SCIENCE (2009)

Review Biochemistry & Molecular Biology

The Nucleosome Family: Dynamic and Growing

Jordanka Zlatanova et al.

STRUCTURE (2009)

Article Biochemistry & Molecular Biology

Spontaneous access to DNA target sites in folded chromatin fibers

Michael G. Poirier et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Review Biochemical Research Methods

A practical guide to single-molecule FRET

Rahul Roy et al.

NATURE METHODS (2008)

Article Biochemical Research Methods

Single-pair FRET microscopy reveals mononucleosome dynamics

W. J. A. Koopmans et al.

JOURNAL OF FLUORESCENCE (2007)

Article Multidisciplinary Sciences

Effect of force on mononucleosomal dynamics

Shirley Mihardja et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules

Alla Shundrovsky et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Rapid spontaneous accessibility of nucleosomal DNA

G Li et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Nucleosomes facilitate their own invasion

G Li et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Nucleosome gaping supports a functional structure for the 30nm chromatin fiber

J Mozziconacci et al.

JOURNAL OF STRUCTURAL BIOLOGY (2003)

Article Multidisciplinary Sciences

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA

BD Brower-Toland et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)