4.8 Article

I-COMS: Interprotein-COrrelated Mutations Server

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Editorial Material Biochemical Research Methods

Big data and other challenges in the quest for orthologs

Erik L. L. Sonnhammer et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

CCMpred-fast and precise prediction of protein residue-residue contacts from correlated mutations

Stefan Seemayer et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

FreeContact: fast and free software for protein contact prediction from residue co-evolution

Laszlo Kajan et al.

BMC BIOINFORMATICS (2014)

Review Genetics & Heredity

Functional and evolutionary implications of gene orthology

Toni Gabaldon et al.

NATURE REVIEWS GENETICS (2013)

Article Biochemistry & Molecular Biology

MISTIC: mutual information server to infer coevolution

Franco L. Simonetti et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Physics, Fluids & Plasmas

Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models

Magnus Ekeberg et al.

PHYSICAL REVIEW E (2013)

Article Multidisciplinary Sciences

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era

Hetunandan Kamisetty et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Biotechnology & Applied Microbiology

Protein structure prediction from sequence variation

Debora S. Marks et al.

NATURE BIOTECHNOLOGY (2012)

Article Multidisciplinary Sciences

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

Timothy Nugent et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Structure of the ATP synthase catalytic complex (F1) from Escherichia coli in an autoinhibited conformation

Gino Cingolani et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Multidisciplinary Sciences

Protein 3D Structure Computed from Evolutionary Sequence Variation

Debora S. Marks et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

Faruck Morcos et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemistry & Molecular Biology

Learning generative models for protein fold families

Sivaraman Balakrishnan et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)

Article Biochemical Research Methods

Studying the co-evolution of protein families with the Mirrortree web server

David Ochoa et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Selection of representative protein data sets

Uwe Hobohm et al.

PROTEIN SCIENCE (2010)

Review Genetics & Heredity

How confident can we be that orthologs are similar, but paralogs differ?

Romain A. Studer et al.

TRENDS IN GENETICS (2009)

Article Biochemical Research Methods

Transcriptional regulatory network discovery via multiple method integration:: application to e. coli KI2

Jingjun Sun et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

WebLogo: A sequence logo generator

GE Crooks et al.

GENOME RESEARCH (2004)

Letter Biochemistry & Molecular Biology

The closest BLAST hit is often not the nearest neighbor

LB Koski et al.

JOURNAL OF MOLECULAR EVOLUTION (2001)