相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Functional roles of nucleosome stability and dynamics
Razvan V. Chereji et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2015)
Mechanisms Underlying Nucleosome Positioning In Vivo
Amanda L. Hughes et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 43 (2014)
Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription
Britta Knight et al.
GENES & DEVELOPMENT (2014)
RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast
Dwaipayan Ganguli et al.
GENOME RESEARCH (2014)
Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development
Vladimir B. Teif et al.
GENOME RESEARCH (2014)
Genome-scale functional characterization of Drosophila developmental enhancers in vivo
Evgeny Z. Kvon et al.
NATURE (2014)
Comparative analysis of the transcriptome across distant species
Mark B. Gerstein et al.
NATURE (2014)
High-resolution digital profiling of the epigenome
Gabriel E. Zentner et al.
NATURE REVIEWS GENETICS (2014)
Transcription-generated torsional stress destabilizes nucleosomes
Sheila S. Teves et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Quantifying the role of steric constraints in nucleosome positioning
H. Tomas Rube et al.
NUCLEIC ACIDS RESEARCH (2014)
Fuzziness and noise in nucleosomal architecture
Oscar Flores et al.
NUCLEIC ACIDS RESEARCH (2014)
Ubiquitous nucleosome crowding in the yeast genome
Razvan V. Chereji et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Cryo-EM Study of the Chromatin Fiber Reveals a Double Helix Twisted by Tetranucleosomal Units
Feng Song et al.
SCIENCE (2014)
Transcribing through the nucleosome
Sheila S. Teves et al.
TRENDS IN BIOCHEMICAL SCIENCES (2014)
Regulation of the Nucleosome Repeat Length In Vivo by the DNA Sequence, Protein Concentrations and Long-Range Interactions
Daria A. Beshnova et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo
Steven Henikoff et al.
ELIFE (2014)
Nucleosome sliding mechanisms: new twists in a looped history
Felix Mueller-Planitz et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Determinants of nucleosome positioning
Kevin Struhl et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning
Georgette Moyle-Heyrman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Toward a unified physical model of nucleosome patterns flanking transcription start sites
Wolfram Moebius et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Nucleosome Dynamics as Modular Systems that Integrate DNA Damage and Repair
Craig L. Peterson et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)
Nucleosome Remodeling and Epigenetics
Peter B. Becker et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)
Remodelers Organize Cellular Chromatin by Counteracting Intrinsic Histone-DNA Sequence Preferences in a Class-Specific Manner
Yuri M. Moshkin et al.
MOLECULAR AND CELLULAR BIOLOGY (2012)
A map of nucleosome positions in yeast at base-pair resolution
Kristin Brogaard et al.
NATURE (2012)
Genome-wide nucleosome positioning during embryonic stem cell development
Vladimir B. Teif et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Defining the Status of RNA Polymerase at Promoters
Leighton J. Core et al.
CELL REPORTS (2012)
Targeting chromatin remodelers: Signals and search mechanisms
Fabian Erdel et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2011)
Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast
Oezgen Deniz et al.
BMC GENOMICS (2011)
Chromatin higher-order structures and gene regulation
Guohong Li et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2011)
Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation
Yuanxin Xi et al.
GENOME RESEARCH (2011)
Statistical Mechanics of Nucleosomes Constrained by Higher-Order Chromatin Structure
Razvan V. Chereji et al.
JOURNAL OF STATISTICAL PHYSICS (2011)
Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters
Denis Tolkunov et al.
MOLECULAR BIOLOGY OF THE CELL (2011)
Determinants of nucleosome organization in primary human cells
Anton Valouev et al.
NATURE (2011)
Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions
Razvan V. Chereji et al.
PHYSICAL REVIEW E (2011)
A Role for Snf2-Related Nucleosome-Spacing Enzymes in Genome-Wide Nucleosome Organization
Triantaffyllos Gkikopoulos et al.
SCIENCE (2011)
A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome
Zhenhai Zhang et al.
SCIENCE (2011)
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
Assaf Weiner et al.
GENOME RESEARCH (2010)
The Effect of Micrococcal Nuclease Digestion on Nucleosome Positioning Data
Ho-Ryun Chung et al.
PLOS ONE (2010)
High-throughput sequencing reveals a simple model of nucleosome energetics
George Locke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Genome-Wide Kinetics of Nucleosome Turnover Determined by Metabolic Labeling of Histones
Roger B. Deal et al.
SCIENCE (2010)
An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo
Lia E. Gracey et al.
EPIGENETICS & CHROMATIN (2010)
G plus C content dominates intrinsic nucleosome occupancy
Desiree Tillo et al.
BMC BIOINFORMATICS (2009)
The folding and unfolding of eukaryotic chromatin
Andrew Bassett et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)
The DNA-encoded nucleosome organization of a eukaryotic genome
Noam Kaplan et al.
NATURE (2009)
The logic of chromatin architecture and remodelling at promoters
Bradley R. Cairns
NATURE (2009)
Nucleosome positioning and gene regulation: advances through genomics
Cizhong Jiang et al.
NATURE REVIEWS GENETICS (2009)
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
Yong Zhang et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells
Benjamin Audit et al.
NUCLEIC ACIDS RESEARCH (2009)
Thermodynamics of Intragenic Nucleosome Ordering
G. Chevereau et al.
PHYSICAL REVIEW LETTERS (2009)
Nucleosome positioning by genomic excluding-energy barriers
Pascale Milani et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
Travis N. Mavrich et al.
GENOME RESEARCH (2008)
Activator Control of Nucleosome Occupancy in Activation and Repression of Transcription
Gene O. Bryant et al.
PLOS BIOLOGY (2008)
A high- resolution atlas of nucleosome occupancy in yeast
William Lee et al.
NATURE GENETICS (2007)
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
Istvan Albert et al.
NATURE (2007)
Nucleosome positions predicted through comparative genomics
Ilya P. Ioshikhes et al.
NATURE GENETICS (2006)
A genomic code for nucleosome positioning
Eran Segal et al.
NATURE (2006)
X-ray structure of a tetranucleosome and its implications for the chromatin fibre
T Schalch et al.
NATURE (2005)
Chromatin remodeling by RNA polymerases
VM Studitsky et al.
TRENDS IN BIOCHEMICAL SCIENCES (2004)
Nucleosome arrays reveal the two-start organization of the chromatin fiber
B Dorigo et al.
SCIENCE (2004)
Chromatin dynamics: Nucleosomes go mobile through twist defects
IM Kulic et al.
PHYSICAL REVIEW LETTERS (2003)
The physics of chromatin
H Schiessel
JOURNAL OF PHYSICS-CONDENSED MATTER (2003)
Nucleosome repositioning via loop formation
IM Kulic et al.
BIOPHYSICAL JOURNAL (2003)
Spontaneous access of proteins to buried nucleosomal DNA target sites occurs via a mechanism that is distinct from nucleosome translocation
JD Anderson et al.
MOLECULAR AND CELLULAR BIOLOGY (2002)