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Paul L. Boutz et al.
GENES & DEVELOPMENT (2015)
Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling
Wei Zhao et al.
BMC GENOMICS (2014)
Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate
Nova Fong et al.
GENES & DEVELOPMENT (2014)
A Splicing-Dependent Transcriptional Checkpoint Associated with Prespliceosome Formation
Keerthi T. Chathoth et al.
MOLECULAR CELL (2014)
Mechanisms for U2AF to define 3′ splice sites and regulate alternative splicing in the human genome
Changwei Shao et al.
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The UCSC Genome Browser database: 2014 update
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NUCLEIC ACIDS RESEARCH (2014)
Transcriptome analysis of alternative splicing events regulated by SRSF10 reveals position-dependent splicing modulation
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NUCLEIC ACIDS RESEARCH (2014)
Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements
Kathi Zarnack et al.
CELL (2013)
Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression
Steve Lianoglou et al.
GENES & DEVELOPMENT (2013)
Differential analysis of gene regulation at transcript resolution with RNA-seq
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2013)
Alternative cleavage and polyadenylation: extent, regulation and function
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NATURE REVIEWS GENETICS (2013)
Alternative Spliceosome Assembly Pathways Revealed by Single-Molecule Fluorescence Microscopy
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CELL REPORTS (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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GENOME BIOLOGY (2013)
The Poly(A)-Binding Protein Nuclear 1 Suppresses Alternative Cleavage and Polyadenylation Sites
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CELL (2012)
Detecting differential usage of exons from RNA-seq data
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GENOME RESEARCH (2012)
A U1-U2 snRNP Interaction Network during Intron Definition
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MOLECULAR AND CELLULAR BIOLOGY (2012)
The Super Elongation Complex Family of RNA Polymerase II Elongation Factors: Gene Target Specificity and Transcriptional Output
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MOLECULAR AND CELLULAR BIOLOGY (2012)
hnRNP A1 Proofreads 3′ Splice Site Recognition by U2AF
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MOLECULAR CELL (2012)
Dynamic Protein-Protein Interaction Wiring of the Human Spliceosome
Anna Hegele et al.
MOLECULAR CELL (2012)
Fast gapped-read alignment with Bowtie 2
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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
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NATURE PROTOCOLS (2012)
Large-scale mapping of branchpoints in human pre-mRNA transcripts in vivo
Allison J. Taggart et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Functional mammalian spliceosomal complex E contains SMN complex proteins in addition to U1 and U2 snRNPs
Evgeny M. Makarov et al.
NUCLEIC ACIDS RESEARCH (2012)
Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse
Yevgenia L. Khodor et al.
RNA (2012)
Post-transcriptional spliceosomes are retained in nuclear speckles until splicing completion
Cyrille Girard et al.
NATURE COMMUNICATIONS (2012)
Genome-wide Analysis of Pre-mRNA 3′ End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3′ UTR Length
Georges Martin et al.
CELL REPORTS (2012)
RNA polymerase II kinetics in polo polyadenylation signal selection
Pedro A. B. Pinto et al.
EMBO JOURNAL (2011)
The RNA polymerase II C-terminal domain promotes splicing activation through recruitment of a U2AF65-Prp19 complex
Charles J. David et al.
GENES & DEVELOPMENT (2011)
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
James R. Tollervey et al.
NATURE NEUROSCIENCE (2011)
Analysis of in situ pre-mRNA targets of human splicing factor SF1 reveals a function in alternative splicing
Margherita Corioni et al.
NUCLEIC ACIDS RESEARCH (2011)
An active role for splicing in 3′-end formation
Harold G. Martinson
WILEY INTERDISCIPLINARY REVIEWS-RNA (2011)
Allele-specific recognition of the 3' splice site of INS intron 1
Jana Kralovicova et al.
HUMAN GENETICS (2010)
Analysis and design of RNA sequencing experiments for identifying isoform regulation
Yarden Katz et al.
NATURE METHODS (2010)
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
Miriam Llorian et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
Jesper V. Olsen et al.
SCIENCE SIGNALING (2010)
Genome-Wide Association between Branch Point Properties and Alternative Splicing
Andre Corvelo et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
The Spliceosome: Design Principles of a Dynamic RNP Machine
Markus C. Wahl et al.
CELL (2009)
Dimerization and Protein Binding Specificity of the U2AF Homology Motif of the Splicing Factor Puf60
Lorenzo Corsini et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
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NATURE PROTOCOLS (2009)
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
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NUCLEIC ACIDS RESEARCH (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Control of Pre-mRNA Splicing by the General Splicing Factors PUF60 and U2AF65
Michelle L. Hastings et al.
PLOS ONE (2007)
Aberrant 5′ splice sites in human disease genes:: mutation pattern, nucleotide structure and comparison of computational tools that predict their utilization
Emanuele Buratti et al.
NUCLEIC ACIDS RESEARCH (2007)
In vivo requirement of the small subunit of U2AF for recognition of a weak 3′ splice site
Teresa R. Pacheco et al.
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An interaction between U2AF 65 and CFIm links the splicing and 3′ end processing machineries
Stefania Millevoi et al.
EMBO JOURNAL (2006)
RNA interference knockdown of hU2AF35 impairs cell cycle progression and modulates alternative splicing of Cdc25 transcripts
Teresa Raquel Pacheco et al.
MOLECULAR BIOLOGY OF THE CELL (2006)
Using RNA secondary structures to guide sequence motif finding towards single-stranded regions
Michael Hiller et al.
NUCLEIC ACIDS RESEARCH (2006)
Intron removal requires proofreading of U2AF/3′ splice site recognition by DEK
Luis Miguel Mendes Soares et al.
SCIENCE (2006)
Thermodynamics of RNA-RNA binding
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BIOINFORMATICS (2006)
Position-dependent repression and promotion of DQB1 intron 3 splicing by GGGG motifs
J Kralovicová et al.
JOURNAL OF IMMUNOLOGY (2006)
Molecular characterization and phylogeny of U2AF35 homologs in plants
BB Wang et al.
PLANT PHYSIOLOGY (2006)
Aberrant 3 ' splice sites in human disease genes: mutation pattern, nucleotide structure and comparison of computational tools that predict their utilization
Igor Vorechovsky
NUCLEIC ACIDS RESEARCH (2006)
Steroid hormone receptor coactivation and alternative RNA splicing by U2AF65-Related proteins CAPERα and CAPERβ
DH Dowhan et al.
MOLECULAR CELL (2005)
Analysis of mutant phenotypes and splicing defects demonstrates functional collaboration between the large and small subunits of the essential splicing factor U2AF in vivo
CJ Webb et al.
MOLECULAR BIOLOGY OF THE CELL (2005)
Biased exon/intron distribution of cryptic and de novo 3 ' splice sites
J Kralovicova et al.
NUCLEIC ACIDS RESEARCH (2005)
Tropomyosin exon 6b is troponin-specific and required for correct acto-myosin regulation
R Maytum et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
U2AF homology motifs:: protein recognition in the RRM world
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GENES & DEVELOPMENT (2004)
Newly initiated RNA encounters a factor involved in splicing immediately upon emerging from within RNA polymerase II
A Ujvári et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Diversity of vertebrate splicing factor U2AF35 -: Identification of alternatively spliced U2AF1 mRNAs
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JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
G Yeo et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2004)
U2 small nuclear ribonucleoprotein particle (snRNP) auxiliary factor of 65 kDa, U2AF65, can promote U1 snRNP recruitment to 5′ splice sites
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BIOCHEMICAL JOURNAL (2003)
Tropomyosin isoforms from the γ gene differing at the C-terminus are spatially and developmentally regulated in the brain
B Vrhovski et al.
JOURNAL OF NEUROSCIENCE RESEARCH (2003)
A novel function for the U2AF 65 splicing factor in promoting pre-mRNA 3′-end processing
S Millevoi et al.
EMBO REPORTS (2002)
Splicing and transcription-associated proteins PSF and p54nrb/NonO bind to the RNA polymerase II CTD
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RNA (2002)
An RNA polymerase pause site is associated with the immunoglobulin μs poly(A) site
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MOLECULAR AND CELLULAR BIOLOGY (2002)
Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development
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NATURE GENETICS (2002)
Functional interaction of yeast pre-mRNA 3′ end processing factors with RNA polymerase II
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MOLECULAR CELL (2002)
Characterization of U2AF(26), a splicing factor related to U2AF(35)
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MOLECULAR AND CELLULAR BIOLOGY (2002)
Dual function for U2AF35 in AG-dependent pre-mRNA splicing
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MOLECULAR AND CELLULAR BIOLOGY (2001)
The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1
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MOLECULAR AND CELLULAR BIOLOGY (2001)
A novel peptide recognition mode revealed by the X-ray structure of a core U2AF-35/U2AF65 heterodimer
CL Kielkopf et al.
CELL (2001)
The role of U2AF35 and U2AF65 in enhancer-dependent splicing
BR Graveley et al.
RNA (2001)
Conserved stem-loop structures in the HIV-1 RNA region containing the A3 3′ splice site and its cis-regulatory element:: possible involvement in RNA splicing
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NUCLEIC ACIDS RESEARCH (2001)
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II
DP Morris et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry
P Ajuh et al.
EMBO JOURNAL (2000)
Profilin II is alternatively spliced, resulting in profilin isoforms that are differentially expressed and have distinct biochemical properties
A Lambrechts et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
The FBP interacting repressor targets TFIIH to inhibit activated transcription
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MOLECULAR CELL (2000)