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Michal Levo et al.
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Teresa M. Przytycka et al.
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Yuchen Pan et al.
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Lin Yang et al.
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Protein-DNA binding in the absence of specific base-pair recognition
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Matthew Slattery et al.
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Flavien Pillet et al.
BIOSENSORS & BIOELECTRONICS (2013)
RAP: Accurate and Fast Motif Finding Based on Protein-Binding Microarray Data
Yaron Orenstein et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2013)
Microfluidic Screening of Electrophoretic Mobility Shifts Elucidates Riboswitch Binding Function
Kelly Karns et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale
Tianyin Zhou et al.
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Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape
Raluca Gordan et al.
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Advances in the study of protein-DNA interaction
Yu-Hang Cai et al.
AMINO ACIDS (2012)
On-line sample pre-concentration in microfluidic devices: A review
Braden C. Giordano et al.
ANALYTICA CHIMICA ACTA (2012)
Massively parallel measurements of molecular interaction kinetics on a microfluidic platform
Marcel Geertz et al.
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Matthew Slattery et al.
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Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
Ho Sung Rhee et al.
CELL (2011)
Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument
Razvan Nutiu et al.
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Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
Arttu Jolma et al.
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De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis
Polly M. Fordyce et al.
NATURE BIOTECHNOLOGY (2010)
Characterization of DNA-Binding Proteins Using Multiplexed Competitor EMSA
Andrew J. P. Smith et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Analysis of combinatorial cis-regulation in synthetic and genomic promoters
Jason Gertz et al.
NATURE (2009)
An in vitro microfluidic approach to generating protein-interaction networks
Doron Gerber et al.
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From DNA sequence to transcriptional behaviour: a quantitative approach
Eran Segal et al.
NATURE REVIEWS GENETICS (2009)
Insights from genomic profiling of transcription factors
Peggy J. Farnham
NATURE REVIEWS GENETICS (2009)
Diversity and Complexity in DNA Recognition by Transcription Factors
Gwenael Badis et al.
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Understanding the Adaptive Growth Strategy of Lactobacillus plantarum by In Silico Optimisation
Bas Teusink et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Predicting expression patterns from regulatory sequence in Drosophila segmentation
Eran Segal et al.
NATURE (2008)
A quantitative model of transcription factor-activated gene expression
Harold D. Kim et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Genome-wide mapping of in vivo protein-DNA interactions
David S. Johnson et al.
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SPR microscopy and its applications to high-throughput analyses of biomolecular binding events and their kinetics
Charles T. Campbell et al.
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A systems approach to measuring the binding energy landscapes of transcription factors
Sebastian J. Maerkl et al.
SCIENCE (2007)
Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions
Lance M. Hellman et al.
NATURE PROTOCOLS (2007)
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
Michael F. Berger et al.
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Extensive low-affinity transcriptional interactions in the yeast genome
Amos Tanay
GENOME RESEARCH (2006)
Defining the sequence-recognition profile of DNA-binding molecules
CL Warren et al.
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Identifying DNA sequences recognized by a transcription factor using a bacterial one-hybrid system
Xiangdong Meng et al.
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A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors
XD Meng et al.
NATURE BIOTECHNOLOGY (2005)
Mass spectrometric identification of RNA binding proteins from dried EMSA gels
SR Dominique et al.
JOURNAL OF PROTEOME RESEARCH (2004)
Parallel, quantitative measurement of protein binding to a 120-element double-stranded DNA array in real time using surface plasmon resonance microscopy
JS Shumaker-Parry et al.
ANALYTICAL CHEMISTRY (2004)
Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
S Mukherjee et al.
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Manual 768 or 384 well microplate gel 'dry' electrophoresis for PCR checking and SNP genotyping
TR Gaunt et al.
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Genome-wide analysis of CREB target genes reveals a core promoter requirement for cAMP responsiveness
MD Conkright et al.
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Microfluidic large-scale integration
T Thorsen et al.
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Microfabricated 384-lane capillary array electrophoresis bioanalyzer for ultrahigh-throughput genetic analysis
CA Emrich et al.
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Function and regulation of CREB family transcription factors in the nervous system
BE Lonze et al.
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Transcription - Signal transduction and the control of gene expression
AH Brivanlou et al.
SCIENCE (2002)
Temperature measurement in microfluidic systems using a temperature-dependent fluorescent dye
D Ross et al.
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Exploring the DNA-binding specificities of zinc fingers with DNA microarrays
ML Bulyk et al.
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Concentration and separation of proteins in microfluidic channels on the basis of transverse IEF
K Macounová et al.
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Genome-wide location and function of DNA binding proteins
B Ren et al.
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Stimulus-specific assembly of enhancer complexes on the tumor necrosis factor alpha gene promoter
JV Falvo et al.
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