4.7 Article

Dry Martini, a Coarse-Grained Force Field for Lipid Membrane Simblations with Implicit Solvent

期刊

JOURNAL OF CHEMICAL THEORY AND COMPUTATION
卷 11, 期 1, 页码 260-275

出版社

AMER CHEMICAL SOC
DOI: 10.1021/ct500477k

关键词

-

资金

  1. Emil Aaltonen Foundation
  2. Rubicon Grant from The Netherlands Organization for Scientific Research (NWO)

向作者/读者索取更多资源

Coarse-grained (CG) models allow simulation of larger systems for longer times by decreasing the number of degrees of freedom compared with all-atom models. Here we introduce an implicit-solvent version of the popular CG Martini model, nicknamed Dry Martini. To account for the omitted solvent degrees of freedom, the nonbonded interaction matrix underlying the Martini force field was reparametrized. The Dry Martini force field reproduces relatively well a variety of lipid membrane properties such as area per lipid, bilayer thickness, bending modulus, and coexistence of liquid-ordered and disordered domains. Furthermore, we show that the new model can be applied to study membrane fusion and tether formation, with results similar to those of the standard Martini model. Membrane proteins can also be included, but less quantitative results are obtained. The absence of water in Dry Martini leads to a significant speedup for large systems, opening the way to the study of complex multicomponent membranes containing millions of lipids.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

暂无数据
暂无数据