4.7 Article

Variational Implicit Solvation with Poisson-Boltzmann Theory

期刊

JOURNAL OF CHEMICAL THEORY AND COMPUTATION
卷 10, 期 4, 页码 1454-1467

出版社

AMER CHEMICAL SOC
DOI: 10.1021/ct401058w

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资金

  1. National Science Foundation (NSF) [DMS-1319731]
  2. Center for Theoretical Biological Physics through the NSF [PHY-0822283]
  3. National Institutes of Health (NIH) [R01GM096188]
  4. Deutsche Forschungsgemeinschaft (DFG)
  5. NSF
  6. NIH
  7. HHMI
  8. CTBP
  9. NBCR
  10. Direct For Mathematical & Physical Scien
  11. Division Of Physics [1308264] Funding Source: National Science Foundation
  12. Division Of Mathematical Sciences
  13. Direct For Mathematical & Physical Scien [1319731] Funding Source: National Science Foundation
  14. Div Of Molecular and Cellular Bioscience
  15. Direct For Biological Sciences [1020765] Funding Source: National Science Foundation

向作者/读者索取更多资源

We incorporate the Poisson-Boltzmann (PB) theory of electrostatics into our variational implicit-solvent model (VISM) for the solvation of charged molecules in an aqueous solvent. In order to numerically relax the VISM free-energy functional by our level-set method, we develop highly accurate methods for solving the dielectric PB equation and for computing the dielectric boundary force. We also apply our VISM-PB theory to analyze the solvent potentials of mean force and the effect of charges on the hydrophobic hydration for some selected molecular systems. These include some single ions, two charged particles, two charged plates, and the host guest system Cucurbit[7]uril and Bicyclo[2.2.2]octane. Our computational results show that VISM with PB theory can capture well the sensitive response of capillary evaporation to the charge in hydrophobic confinement and the polymodal hydration behavior and can provide accurate estimates of binding affinity of the host-guest system. We finally discuss several issues for further improvement of VISM.

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