4.7 Article

New Interaction Parameters for Oxygen Compounds in the GROMOS Force Field: Improved Pure-Liquid and Solvation Properties for Alcohols, Ethers, Aldehydes, Ketones, Carboxylic Acids, and Esters

期刊

JOURNAL OF CHEMICAL THEORY AND COMPUTATION
卷 7, 期 4, 页码 1016-1031

出版社

AMER CHEMICAL SOC
DOI: 10.1021/ct1006407

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资金

  1. Swiss National Science Foundation [21-121895, 200020-121913]
  2. National Center of Competence in Research (NCCR) in Structural Biology
  3. European Research Council [228076]

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A new parameter set (53A6(OXY)) is developed for the GROMOS force field, that combines reoptimized parameters for the oxygen-containing chemical functions (alcohols, ethers, aldehydes, ketones, carboxylic acids, and esters) with the current biomolecular force field version (53A6) for all other functions. In the context of oxygen-containing functions, the 53A6(OXY) parameter set is obtained by optimization of simulated pure-liquid properties, namely the density rho(liq) and enthalpy of vaporization Delta H-vap, as well as sclvation properties, namely the free energies of solvation in water Delta G(wat) and in cydohexane Delta G(che), against experimental data for 10 selected organic compounds, and further tested for 25 other compounds. The simultaneous refinement of atomic charges and Lennard-Jones interaction parameters against the four mentioned types of properties provides a single parameter set for the simulation of both liquid and biomolecular systems. Small changes in the covalent parameters controlling the geometry of the oxygen-containing chemical functions are also undertaken. The new 53A6(OXY) force-field parameters reproduce the mentioned experimental data within root-mean-square deviations of 22.4 kg m(-3) (rho(liq)), 3.1 kJ mol(-1) (Delta H-vap), 3.0 kJ mol(-1) (Delta G(wat)), and 1.7 kJ mol(-1) (Delta G(che)) for the 35 compounds considered.

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