相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Evaluating the applicability of the Fokker-Planck equation in polymer translocation: A Brownian dynamics study
James M. Polson et al.
JOURNAL OF CHEMICAL PHYSICS (2014)
Curl flux, coherence, and population landscape of molecular systems: Nonequilibrium quantum steady state, energy (charge) transport, and thermodynamics
Z. D. Zhang et al.
JOURNAL OF CHEMICAL PHYSICS (2014)
Unifying Three Perspectives on Information Processing in Stochastic Thermodynamics
A. C. Barato et al.
PHYSICAL REVIEW LETTERS (2014)
Stochastic thermodynamics of fluctuating density fields: Non-equilibrium free energy differences under coarse-graining
T. Leonard et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
Potential and flux field landscape theory. I. Global stability and dynamics of spatially dependent non-equilibrium systems
Wei Wu et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
Landscape Framework and Global Stability for Stochastic Reaction Diffusion and General Spatially Extended Systems with Intrinsic Fluctuations
Wei Wu et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2013)
Stochastic thermodynamics across scales: Emergent inter-attractoral discrete Markov jump process and its underlying continuous diffusion
Moises Santillan et al.
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2013)
Dissipation, generalized free energy, and a self-consistent nonequilibrium thermodynamics of chemically driven open subsystems
Hao Ge et al.
PHYSICAL REVIEW E (2013)
Temperature-driven irreversible generalized Langevin equation can capture the nonequilibrium dynamics of two dissipated coupled oscillators
Alexander V. Popov et al.
PHYSICAL REVIEW E (2013)
Markovian dynamics on complex reaction networks
J. Goutsias et al.
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS (2013)
Pattern formation from consistent dynamical closures of uniaxial nematic liquid crystals
Humberto Hijar et al.
JOURNAL OF CHEMICAL PHYSICS (2012)
The energy pump and the origin of the non-equilibrium flux of the dynamical systems and the networks
Liufang Xu et al.
JOURNAL OF CHEMICAL PHYSICS (2012)
The potential and flux landscape theory of evolution
Feng Zhang et al.
JOURNAL OF CHEMICAL PHYSICS (2012)
Stochastic thermodynamics under coarse graining
Massimiliano Esposito
PHYSICAL REVIEW E (2012)
Entropy Production in Nonequilibrium Systems at Stationary States
Tania Tome et al.
PHYSICAL REVIEW LETTERS (2012)
Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics
Hao Ge et al.
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS (2012)
Stochastic thermodynamics, fluctuation theorems and molecular machines
Udo Seifert
REPORTS ON PROGRESS IN PHYSICS (2012)
Correlation function, response function and effective temperature of gene networks
Haidong Feng et al.
CHEMICAL PHYSICS LETTERS (2011)
Stochastic thermodynamics of single enzymes and molecular motors
U. Seifert
EUROPEAN PHYSICAL JOURNAL E (2011)
Potential and flux decomposition for dynamical systems and non-equilibrium thermodynamics: Curvature, gauge field, and generalized fluctuation-dissipation theorem
Haidong Feng et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
Glassy dynamics and mechanical response in dense fluids of soft repulsive spheres. II. Shear modulus, relaxation-elasticity connections, and rheology
Jian Yang et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
Irreversible thermodynamics in multiscale stochastic dynamical systems
Moises Santillan et al.
PHYSICAL REVIEW E (2011)
Existence and uniqueness of solutions for Fokker-Planck equations on Hilbert spaces
Vladimir Bogachev et al.
JOURNAL OF EVOLUTION EQUATIONS (2010)
The many faces of the second law
C. Van den Broeck
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2010)
Entropy production in irreversible systems described by a Fokker-Planck equation
Tania Tome et al.
PHYSICAL REVIEW E (2010)
Discretization-related issues in the Kardar-Parisi-Zhang equation: Consistency, Galilean-invariance violation, and fluctuation-dissipation relation
H. S. Wio et al.
PHYSICAL REVIEW E (2010)
Physical origins of entropy production, free energy dissipation, and their mathematical representations
Hao Ge et al.
PHYSICAL REVIEW E (2010)
Three faces of the second law. II. Fokker-Planck formulation
Christian Van den Broeck et al.
PHYSICAL REVIEW E (2010)
Three faces of the second law. I. Master equation formulation
Massimiliano Esposito et al.
PHYSICAL REVIEW E (2010)
Stochastic Thermodynamics and Sustainable Efficiency in Work Production
B. Gaveau et al.
PHYSICAL REVIEW LETTERS (2010)
Three Detailed Fluctuation Theorems
Massimiliano Esposito et al.
PHYSICAL REVIEW LETTERS (2010)
Crystal surfaces in and out of equilibrium: A modern view
Chaouqi Misbah et al.
REVIEWS OF MODERN PHYSICS (2010)
Stochastic Thermodynamics in Mesoscopic Chemical Oscillation Systems
Tiejun Xiao et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2009)
Extended forms of the second law for general time-dependent stochastic processes
Hao Ge
PHYSICAL REVIEW E (2009)
Emerging of stochastic dynamical equalities and steady state thermodynamics from Darwinian dynamics
P. Ao
COMMUNICATIONS IN THEORETICAL PHYSICS (2008)
Stochastic thermodynamics: principles and perspectives
U. Seifert
EUROPEAN PHYSICAL JOURNAL B (2008)
On the work - Hamiltonian connection in manipulated systems
Luca Peliti
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2008)
Generalized Langevin equation for solids. II. Stochastic boundary conditions for nonequilibrium molecular dynamics simulations
L. Kantorovich et al.
PHYSICAL REVIEW B (2008)
When can the fokker-planck equation describe anomalous or chaotic transport?
D. F. Escande et al.
PHYSICAL REVIEW LETTERS (2007)
Probability currents as principal characteristics in the statistical mechanics of non-equilibrium steady states
R. K. P. Zia et al.
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2007)
Spatiotemporal order out of noise
Francesc Sagues et al.
REVIEWS OF MODERN PHYSICS (2007)
Generalized Jarzynski's equality in inhomogeneous Markov chains
Hao Ge et al.
JOURNAL OF MATHEMATICAL PHYSICS (2007)
Entropy production in nonequilibrium systems described by a Fokker-Planck equation
Tania Tome
BRAZILIAN JOURNAL OF PHYSICS (2006)
Funneled landscape leads to robustness of cell networks: Yeast cell cycle
Jin Wang et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Master equation methods in gas phase chemical kinetics
James A. Miller et al.
JOURNAL OF PHYSICAL CHEMISTRY A (2006)
Entropy production along a stochastic trajectory and an integral fluctuation theorem
U Seifert
PHYSICAL REVIEW LETTERS (2005)
Stochastic reaction-diffusion simulation with MesoRD
J Hattne et al.
BIOINFORMATICS (2005)
Potential in stochastic differential equations: novel construction
P Ao
JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL (2004)
Stochastic Navier-Stokes equations for turbulent flows
R Mikulevicius et al.
SIAM JOURNAL ON MATHEMATICAL ANALYSIS (2004)
Entropy production fluctuations of finite Markov chains
DQ Jiang et al.
JOURNAL OF MATHEMATICAL PHYSICS (2003)
Thermodynamics of the general diffusion process: Time-reversibility and entropy production
H Qian et al.
JOURNAL OF STATISTICAL PHYSICS (2002)
The chemical Langevin and Fokker-Planck equations for the reversible isomerization reaction
DT Gillespie
JOURNAL OF PHYSICAL CHEMISTRY A (2002)
A spatial stochastic neuronal model with Ornstein-Uhlenbeck input current
HC Tuckwell et al.
BIOLOGICAL CYBERNETICS (2002)
Mesoscopic nonequilibrium thermodynamics of single macromolecules and dynamic entropy-energy compensation
H Qian
PHYSICAL REVIEW E (2002)
Stochastic dynamics of Ginzburg-Landau vortices in superconductors
J Deang et al.
PHYSICAL REVIEW B (2001)
Steady-state thermodynamics of Langevin systems
T Hatano et al.
PHYSICAL REVIEW LETTERS (2001)
A sketch of continuum thermodynamics
W Muschik et al.
JOURNAL OF NON-NEWTONIAN FLUID MECHANICS (2001)
The chemical Langevin equation
DT Gillespie
JOURNAL OF CHEMICAL PHYSICS (2000)
Path-ensemble averages in systems driven far from equilibrium
GE Crooks
PHYSICAL REVIEW E (2000)