期刊
JOURNAL OF CHEMICAL PHYSICS
卷 137, 期 21, 页码 -出版社
AIP Publishing
DOI: 10.1063/1.4769075
关键词
-
资金
- Ministry of Education, Culture, Sports, Science, and Technology [23118701]
- Nanoscience Program of the Next-Generation Supercomputing Project
- Computational Materials Science Initiative of the Next-Generation Supercomputing Project
- Grants-in-Aid for Scientific Research [22750003, 21245002] Funding Source: KAKEN
We have developed a method of molecular simulations utilizing a polarizable force field in combination with the theory of energy representation (ER) for the purpose of establishing an efficient and accurate methodology to compute solvation free energies. The standard version of the ER method is, however, based on the assumption that the solute-solvent interaction is pairwise additive for its construction. A crucial step in the present method is to introduce an intermediate state in the solvation process to treat separately the many-body interaction associated with the polarizable model. The intermediate state is chosen so that the solute-solvent interaction can be formally written in the pairwise form, though the solvent molecules are interacting with each other with polarizable charges dependent on the solvent configuration. It is, then, possible to extract the free energy contribution delta mu due to the many-body interaction between solute and solvent from the total solvation free energy Delta mu. It is shown that the free energy delta mu can be computed by an extension of the recent development implemented in quantum mechanical/molecular mechanical simulations. To assess the numerical robustness of the approach, we computed the solvation free energies of a water and a methanol molecule in water solvent, where two paths for the solvation processes were examined by introducing different intermediate states. The solvation free energies of a water molecule associated with the two paths were obtained as -5.3 and -5.8 kcal/mol. Those of a methanol molecule were determined as -3.5 and -3.7 kcal/mol. These results of the ER simulations were also compared with those computed by a numerically exact approach. It was demonstrated that the present approach produces the solvation free energies in comparable accuracies to simulations of thermodynamic integration (TI) method within a tenth of computational time used for the TI simulations. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4769075]
作者
我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。
推荐
暂无数据