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Brinda Kizhakke Vallat et al.
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Sheng-You Huang et al.
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ClusPro: Performance in CAPRI rounds 6-11 and the new server
Stephen R. Comeau et al.
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FireDock: Fast interaction refinement in molecular docking
Nelly Andrusier et al.
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ZRANK: Reranking protein docking predictions with an optimized energy function
Brian Pierce et al.
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Dima Kozakov et al.
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GRAMM-X public web server for protein-protein docking
Andrey Tovchigrechko et al.
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Optimal design of protein docking potentials: Efficiency and limitations
D Tobi et al.
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Advances in protein structure prediction and de novo protein design:: A review
CA Floudas et al.
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Atomically detailed potentials to recognize native and approximate protein structures
J Qiu et al.
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Protein-protein docking benchmark 2.0: An update
J Mintseris et al.
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TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
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Developing optimal non-linear scoring function for protein design
CY Hu et al.
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ClusPro: An automated docking and discrimination method for the prediction of protein complexes
SR Comeau et al.
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Large-scale linear programming techniques for the design of protein folding potentials
M Wagner et al.
MATHEMATICAL PROGRAMMING (2004)
Exploring protein native states and large-scale conformational changes with a modified generalized born model
A Onufriev et al.
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ZDOCK: An initial-stage protein-docking algorithm
R Chen et al.
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Development of unified statistical potentials describing protein-protein interactions
H Lu et al.
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Object-oriented software for quadratic programming
EM Gertz et al.
ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE (2003)
A distance-dependent atomic knowledge-based potential for improved protein structure selection
H Lu et al.
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Protein docking using continuum electrostatics and geometric fit
JG Mandell et al.
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The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)