期刊
JOURNAL OF CHEMICAL PHYSICS
卷 132, 期 7, 页码 -出版社
AMER INST PHYSICS
DOI: 10.1063/1.3310809
关键词
biochemistry; biodiffusion; molecular biophysics; proteins; reaction-diffusion systems; stochastic processes
资金
- National Science Foundation [ECCS0835847, ECCS-0802008, IGERT DGE-21715]
- U.S. Department of Energy [DE-FG02-04ER25621]
- National Institutes of Health [R01EB7511, R01GM049831]
- U.S. Army Research Office [DAAD19-03-D-0004]
- Directorate For Engineering [0802008] Funding Source: National Science Foundation
- Div Of Electrical, Commun & Cyber Sys [0802008] Funding Source: National Science Foundation
We have developed a computational framework for accurate and efficient simulation of stochastic spatially inhomogeneous biochemical systems. The new computational method employs a fractional step hybrid strategy. A novel formulation of the finite state projection (FSP) method, called the diffusive FSP method, is introduced for the efficient and accurate simulation of diffusive transport. Reactions are handled by the stochastic simulation algorithm.
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