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Jaegil Kim et al.
JOURNAL OF CHEMICAL PHYSICS (2010)
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Simulated Solute Tempering
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Relationship between protein folding thermodynamics and the energy landscape
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From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering
Ayori Mitsutake et al.
PHYSICAL REVIEW E (2009)
Simulated tempering yields insight into the low-resolution Rosetta scoring functions
Gregory R. Bowman et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
All-atom level direct folding simulation of a ββα miniprotein
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JOURNAL OF CHEMICAL PHYSICS (2008)
Convergence of folding free energy landscapes via application of enhanced sampling methods in a distributed computing environment
Xuhui Huang et al.
JOURNAL OF CHEMICAL PHYSICS (2008)
Comparison of sampling efficiency between simulated tempering and replica exchange
Cheng Zhang et al.
JOURNAL OF CHEMICAL PHYSICS (2008)
Comparison of the serial and parallel algorithms of generalized ensemble simulations: An analytical approach
Sanghyun Park
PHYSICAL REVIEW E (2008)
Microcanonical versus canonical analysis of protein folding
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PHYSICAL REVIEW LETTERS (2008)
Efficient parallel tempering for first-order phase transitions
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PHYSICAL REVIEW E (2007)
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PHYSICAL REVIEW E (2007)
Choosing weights for simulated tempering
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Structure optimization and folding mechanisms of off-lattice protein models using statistical temperature molecular dynamics simulation: Statistical temperature annealing
Jaegil Kim et al.
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Performances of Wang-Landau algorithms for continuous systems
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PHYSICAL REVIEW E (2006)
Replica exchange with solute tempering: A method for sampling biological systems in explicit water
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Optimal allocation of replicas in parallel tempering simulations
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PHYSICAL REVIEW E (2004)
Performance limitations of flat-histogram methods -: art. no. 097201
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PHYSICAL REVIEW E (2004)
Generalized simulated tempering realized on expanded ensembles of non-Boltzmann weights
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JOURNAL OF CHEMICAL PHYSICS (2004)
Replica-exchange method using the generalized effective potential
SM Jang et al.
PHYSICAL REVIEW LETTERS (2003)
Dynamical origin of uniform sampling in multicanonical ensemble
JG Kim et al.
PHYSICAL REVIEW E (2003)
On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction
H Fukunishi et al.
JOURNAL OF CHEMICAL PHYSICS (2002)
Structure of Met-enkephalin in explicit aqueous solution using replica exchange molecular dynamics
KY Sanbonmatsu et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2002)
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PHYSICAL REVIEW E (2002)
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PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2002)
Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram
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PHYSICAL REVIEW E (2001)
Negative heat capacity for a cluster of 147 sodium atoms
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PHYSICAL REVIEW LETTERS (2001)
Replica-exchange simulated tempering method for simulations of frustrated systems
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PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Negative heat capacity in the critical region of nuclear fragmentation: an experimental evidence of the liquid-gas phase transition
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PHYSICS LETTERS B (2000)