4.7 Article

Markovian milestoning with Voronoi tessellations

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Chemistry, Physical

Nonequilibrium umbrella sampling in spaces of many order parameters

Alex Dickson et al.

JOURNAL OF CHEMICAL PHYSICS (2009)

Article Chemistry, Physical

Revisiting the finite temperature string method for the calculation of reaction tubes and free energies

Eric Vanden-Eijnden et al.

JOURNAL OF CHEMICAL PHYSICS (2009)

Article Biochemistry & Molecular Biology

Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer

Peter J. Bond et al.

BIOCHEMISTRY (2008)

Article Biophysics

Molecular simulations of lipid-mediated protein-protein interactions

Frederick Jean-Marie de Meyer et al.

BIOPHYSICAL JOURNAL (2008)

Article Chemistry, Physical

Building Markov state models along pathways to determine free energies and rates of transitions

Albert C. Pan et al.

JOURNAL OF CHEMICAL PHYSICS (2008)

Article Chemistry, Physical

On the assumptions underlying milestoning

Eric Vanden-Eijnden et al.

JOURNAL OF CHEMICAL PHYSICS (2008)

Article Chemistry, Physical

Coarse master equations for peptide folding dynamics

Nicolae-Viorel Buchete et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Article Chemistry, Physical

Extending molecular dynamics time scales with milestoning: Example of complex kinetics in a solvated peptide

Anthony M. A. West et al.

JOURNAL OF CHEMICAL PHYSICS (2007)

Article Chemistry, Physical

Second-order integrators for Langevin equations with holonomic constraints

Eric Vanden-Eijnden et al.

CHEMICAL PHYSICS LETTERS (2006)

Article Computer Science, Interdisciplinary Applications

A stochastic Trotter integration scheme for dissipative particle dynamics

M. Serrano et al.

MATHEMATICS AND COMPUTERS IN SIMULATION (2006)

Article Chemistry, Physical

String method in collective variables: Minimum free energy paths and isocommittor surfaces

Luca Maragliano et al.

JOURNAL OF CHEMICAL PHYSICS (2006)

Article Biophysics

Structure and dynamics of model pore insertion into a membrane

CF Lopez et al.

BIOPHYSICAL JOURNAL (2005)

Article Chemistry, Physical

Finite temperature string method for the study of rare events

E Weinan et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2005)

Article Chemistry, Physical

Computing time scales from reaction coordinates by milestoning

AK Faradjian et al.

JOURNAL OF CHEMICAL PHYSICS (2004)

Article Chemistry, Physical

Describing protein folding kinetics by molecular dynamics simulations. 1. Theory

WC Swope et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2004)

Article Physics, Fluids & Plasmas

Molecular simulations of mesoscopic bilayer phases

M Kranenburg et al.

PHYSICAL REVIEW E (2003)

Article Chemistry, Physical

Free energy disconnectivity graphs: Application to peptide models

SV Krivov et al.

JOURNAL OF CHEMICAL PHYSICS (2002)

Article Materials Science, Multidisciplinary

String method for the study of rare events

E Weinan et al.

PHYSICAL REVIEW B (2002)