相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Optimal temperature ladders in replica exchange simulations
Robert Denschlag et al.
CHEMICAL PHYSICS LETTERS (2009)
Thermostat Artifacts in Replica Exchange Molecular Dynamics Simulations
Edina Rosta et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2009)
Efficiency reduction and pseudo-convergence in replica exchange sampling of peptide folding-unfolding equilibria
Robert Denschlag et al.
CHEMICAL PHYSICS LETTERS (2008)
Comparison of sampling efficiency between simulated tempering and replica exchange
Cheng Zhang et al.
JOURNAL OF CHEMICAL PHYSICS (2008)
Exchange frequency in replica exchange molecular dynamics
Daniel Sindhikara et al.
JOURNAL OF CHEMICAL PHYSICS (2008)
How efficient is replica exchange molecular dynamics? An analytic approach
Hugh Nymeyer
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Ensuring mixing efficiency of replica-exchange molecular dynamics simulations
Mark J. Abraham et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Simple continuous and discrete models for simulating replica exchange simulations of protein folding
Weihua Zheng et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Optimized explicit-solvent replica exchange molecular dynamics from scratch
Walter Nadler et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Coarse master equations for peptide folding dynamics
Nicolae-Viorel Buchete et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Peptide folding kinetics from replica exchange molecular dynamics
Nicolae-Viorel Buchete et al.
PHYSICAL REVIEW E (2008)
Dynamics and optimal number of replicas in parallel tempering simulations
Walter Nadler et al.
PHYSICAL REVIEW E (2007)
Optimization of replica exchange molecular dynamics by fast mimicking
Jozef Hritz et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Simulating replica exchange simulations of protein folding with a kinetic network model
Weihua Zheng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Generalized ensemble and tempering simulations: A unified view
Walter Nadler et al.
PHYSICAL REVIEW E (2007)
Optimized parallel tempering simulations of proteins
S Trebst et al.
JOURNAL OF CHEMICAL PHYSICS (2006)
Replica exchange with solute tempering: A method for sampling biological systems in explicit water
P Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Diffusion and electrophoretic mobility of single-stranded RNA from molecular dynamics simulations
IC Yeh et al.
BIOPHYSICAL JOURNAL (2004)
Rate-temperature relationships in λ-repressor fragment λ6-85 folding
WY Yang et al.
BIOCHEMISTRY (2004)
α-Helical stabilization by side chain shielding of backbone hydrogen bonds
AE García et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Rate constants for slow conformational transitions and their sampling errors using single-molecule fluorescence spectroscopy
M Boguñá et al.
JOURNAL OF PHYSICAL CHEMISTRY A (2001)
分享论文
