4.3 Article

A software framework for analysing solid-state MAS NMR data

期刊

JOURNAL OF BIOMOLECULAR NMR
卷 51, 期 4, 页码 437-447

出版社

SPRINGER
DOI: 10.1007/s10858-011-9569-2

关键词

Solid-state MAS NMR; CCPN; Experiment nomenclature; Software; Data model

资金

  1. Deutsche Forschungsgemeinschaft
  2. Biotechnology and Biological Sciences Research Council (UK)
  3. Biotechnology and Biological Sciences Research Council [B20259, BB/E005071/1, BB/H004130/1] Funding Source: researchfish
  4. BBSRC [BB/E005071/1, BB/H004130/1] Funding Source: UKRI

向作者/读者索取更多资源

Solid-state magic-angle-spinning (MAS) NMR of proteins has undergone many rapid methodological developments in recent years, enabling detailed studies of protein structure, function and dynamics. Software development, however, has not kept pace with these advances and data analysis is mostly performed using tools developed for solution NMR which do not directly address solid-state specific issues. Here we present additions to the CcpNmr Analysis software package which enable easier identification of spinning side bands, straightforward analysis of double quantum spectra, automatic consideration of non-uniform labelling schemes, as well as extension of other existing features to the needs of solid-state MAS data. To underpin this, we have updated and extended the CCPN data model and experiment descriptions to include transfer types and nomenclature appropriate for solid-state NMR experiments, as well as a set of experiment prototypes covering the experiments commonly employed by solid-sate MAS protein NMR spectroscopists. This work not only improves solid-state MAS NMR data analysis but provides a platform for anyone who uses the CCPN data model for programming, data transfer, or data archival involving solid-state MAS NMR data.

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