4.7 Review

Bricks and blueprints: methods and standards for DNA assembly

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Editorial Material Biotechnology & Applied Microbiology

Editorial: Yeast synthetic biology: new tools to unlock cellular function

Hal S. Alper et al.

FEMS YEAST RESEARCH (2015)

Article Biochemistry & Molecular Biology

The Addgene repository: an international nonprofit plasmid and data resource

Joanne Kamens

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Total synthesis of a eukaryotic chromosome: Redesigning and SCRaMbLE-ing yeast

Dejana Jovicevic et al.

BIOESSAYS (2014)

Article Biotechnology & Applied Microbiology

Functional optimization of gene clusters by combinatorial design and assembly

Michael J. Smanski et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemical Research Methods

Interactive assembly algorithms for molecular cloning

Evan Appleton et al.

NATURE METHODS (2014)

Review Biochemical Research Methods

Large-scale de novo DNA synthesis: technologies and applications

Sriram Kosuri et al.

NATURE METHODS (2014)

Article Biochemical Research Methods

Unique nucleotide sequence-guided assembly of repetitive DNA parts for synthetic biology applications

Joseph P. Torella et al.

NATURE PROTOCOLS (2014)

Review Genetics & Heredity

A guide to genome engineering with programmable nucleases

Hyongbum Kim et al.

NATURE REVIEWS GENETICS (2014)

Review Microbiology

A brief history of synthetic biology

D. Ewen Cameron et al.

NATURE REVIEWS MICROBIOLOGY (2014)

Article Biochemistry & Molecular Biology

Rapid metabolic pathway assembly and modification using serine integrase site-specific recombination

Sean D. Colloms et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Rapid construction of insulated genetic circuits via synthetic sequence-guided isothermal assembly

Joseph P. Torella et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy

Arturo Casini et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

A platform for rapid prototyping of synthetic gene networks in mammalian cells

Xavier Duportet et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

PaperClip: rapid multi-part DNA assembly from existing libraries

Maryia Trubitsyna et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Total Synthesis of a Functional Designer Eukaryotic Chromosome

Narayana Annaluru et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Multiplex genome engineering in human cells using all-in-one CRISPR/Cas9 vector system

Tetsushi Sakuma et al.

SCIENTIFIC REPORTS (2014)

Article Biochemical Research Methods

Rapid and Reliable DNA Assembly via Ligase Cycling Reaction

Stefan de Kok et al.

ACS SYNTHETIC BIOLOGY (2014)

Article Biochemical Research Methods

PR-PR: Cross-Platform Laboratory Automation System

Gregory Linshiz et al.

ACS SYNTHETIC BIOLOGY (2014)

Article Biochemical Research Methods

R2oDNA Designer: Computational Design of Biologically Neutral Synthetic DNA Sequences

Arturo Casini et al.

ACS SYNTHETIC BIOLOGY (2014)

Article Biochemical Research Methods

Precise and reliable gene expression via standard transcription and translation initiation elements

Vivek K. Mutalik et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

Rapid, modular and reliable construction of complex mammalian gene circuits

Patrick Guye et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

The MASTER (methylation-assisted tailorable ends rational) ligation method for seamless DNA assembly

Wei-Hua Chen et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Plant Sciences

GoldenBraid 2.0: A Comprehensive DNA Assembly Framework for Plant Synthetic Biology

Alejandro Sarrion-Perdigones et al.

PLANT PHYSIOLOGY (2013)

Article Multidisciplinary Sciences

GreenGate - A Novel, Versatile, and Efficient Cloning System for Plant Transgenesis

Athanasios Lampropoulos et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

Genomically Recoded Organisms Expand Biological Functions

Marc J. Lajoie et al.

SCIENCE (2013)

Article Biochemical Research Methods

2ab assembly: a methodology for automatable, high-throughput assembly of standard biological parts

Mariana Leguia et al.

JOURNAL OF BIOLOGICAL ENGINEERING (2013)

Article Biochemical Research Methods

A survey of enabling technologies in synthetic biology

Linda J. Kahl et al.

JOURNAL OF BIOLOGICAL ENGINEERING (2013)

Review Biochemical Research Methods

Contextualizing context for synthetic biology - identifying causes of failure of synthetic biological systems

Stefano Cardinale et al.

BIOTECHNOLOGY JOURNAL (2012)

Article Biochemical Research Methods

Iterative plug-and-play methodology for constructing and modifying synthetic gene networks

Kevin D. Litcofsky et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

SLiCE: a novel bacterial cell extract-based DNA cloning method

Yongwei Zhang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

j5 DNA Assembly Design Automation Software

Nathan J. Hillson et al.

ACS SYNTHETIC BIOLOGY (2012)

Article Cell Biology

DNA assembly for synthetic biology: from parts to pathways and beyond

Tom Ellis et al.

INTEGRATIVE BIOLOGY (2011)

Article Multidisciplinary Sciences

Synthetic chromosome arms function in yeast and generate phenotypic diversity by design

Jessica S. Dymond et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

Re-engineering multicloning sites for function and convenience

Nathan C. Crook et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting

Tomas Cermak et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

A Modular Cloning System for Standardized Assembly of Multigene Constructs

Ernst Weber et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

GoldenBraid: An Iterative Cloning System for Standardized Assembly of Reusable Genetic Modules

Alejandro Sarrion-Perdigones et al.

PLOS ONE (2011)

Article Biochemical Research Methods

Introduction of customized inserts for streamlined assembly and optimization of BioBrick synthetic genetic circuits

Julie E Norville et al.

Journal of Biological Engineering (2011)

Review Biochemistry & Molecular Biology

Homing endonucleases: from basics to therapeutic applications

Maria J. Marcaida et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2010)

Article Biochemical Research Methods

Chemical synthesis of the mouse mitochondrial genome

Daniel G. Gibson et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

Pairwise selection assembly for sequence-independent construction of long-length DNA

William J. Blake et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Algorithms for automated DNA assembly

Douglas Densmore et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome

Daniel G. Gibson et al.

SCIENCE (2010)

Article Biochemical Research Methods

BglBricks: A flexible standard for biological part assembly

J Christopher Anderson et al.

Journal of Biological Engineering (2010)

Article Multidisciplinary Sciences

Programming cells by multiplex genome engineering and accelerated evolution

Harris H. Wang et al.

NATURE (2009)

Article Biochemical Research Methods

Enzymatic assembly of DNA molecules up to several hundred kilobases

Daniel G. Gibson et al.

NATURE METHODS (2009)

Article Biochemistry & Molecular Biology

DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways

Zengyi Shao et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Circular Polymerase Extension Cloning of Complex Gene Libraries and Pathways

Jiayuan Quan et al.

PLOS ONE (2009)

Review Biotechnology & Applied Microbiology

Gene synthesis demystified

Michael J. Czar et al.

TRENDS IN BIOTECHNOLOGY (2009)

Review Biochemistry & Molecular Biology

Synthetic biology for synthetic chemistry

Jay D. Keasling

ACS CHEMICAL BIOLOGY (2008)

Article Multidisciplinary Sciences

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

Carola Engler et al.

PLOS ONE (2008)

Article Multidisciplinary Sciences

One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome

Daniel G. Gibson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome

Daniel G. Gibson et al.

SCIENCE (2008)

Article Biochemical Research Methods

Engineering BioBrick vectors from BioBrick parts

Reshma P Shetty et al.

Journal of Biological Engineering (2008)

Article Biochemical Research Methods

Bottom-up genome assembly using the Bacillus subtilis genome vector

Mitsuhiro Itaya et al.

NATURE METHODS (2008)

Article Biochemical Research Methods

Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC

Mamie Z. Li et al.

NATURE METHODS (2007)

Article Biochemistry & Molecular Biology

USER™ friendly DNA engineering and cloning method by uracil excision

Jurate Bitinaite et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Multidisciplinary Sciences

Emergent properties of reduced-genome Escherichia coli

G Pósfai et al.

SCIENCE (2006)

Review Biochemistry & Molecular Biology

Phage integrases: Biology and applications

AC Groth et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Review Biochemistry & Molecular Biology

Many paths to many clones: A comparative look at high-throughput cloning methods

G Marsischky et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

DNA cloning using in vitro site-specific recombination

JL Hartley et al.

GENOME RESEARCH (2000)

Article Multidisciplinary Sciences

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

KA Datsenko et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)