相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat
Lindsey J. Leach et al.
BMC GENOMICS (2014)
Genome sequence of the cultivated cotton Gossypium arboreum
Fuguang Li et al.
NATURE GENETICS (2014)
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
Jinpu Jin et al.
NUCLEIC ACIDS RESEARCH (2014)
Data, information, knowledge and principle: back to metabolism in KEGG
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2014)
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
Klaus F. X. Mayer et al.
SCIENCE (2014)
Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
Boulos Chalhoub et al.
SCIENCE (2014)
Polyploidy and small RNA regulation of cotton fiber development
Xueying Guan et al.
TRENDS IN PLANT SCIENCE (2014)
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
Sateesh Kagale et al.
NATURE COMMUNICATIONS (2014)
The tobacco genome sequence and its comparison with those of tomato and potato
Nicolas Sierro et al.
NATURE COMMUNICATIONS (2014)
Comparative Evolutionary and Developmental Dynamics of the Cotton (Gossypium hirsutum) Fiber Transcriptome
Mi-Jeong Yoo et al.
PLOS GENETICS (2014)
Transcriptomics and Functional Genomics of ROS-Induced Cell Death Regulation by RADICAL-INDUCED CELL DEATH1
Mikael Brosche et al.
PLOS GENETICS (2014)
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MIPS PlantsDB: a database framework for comparative plant genome research
Thomas Nussbaumer et al.
NUCLEIC ACIDS RESEARCH (2013)
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
Juan C. Motamayor et al.
GENOME BIOLOGY (2013)
Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin
Richard J. A. Buggs et al.
CURRENT BIOLOGY (2012)
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Andrew H. Paterson et al.
NATURE (2012)
Analysis of the breadwheat genome using whole-genome shotgun sequencing
Rachel Brenchley et al.
NATURE (2012)
The draft genome of a diploid cotton Gossypium raimondii
Kunbo Wang et al.
NATURE GENETICS (2012)
Homoeolog expression bias and expression level dominance in allopolyploids
C. E. Grover et al.
NEW PHYTOLOGIST (2012)
Phytozome: a comparative platform for green plant genomics
David M. Goodstein et al.
NUCLEIC ACIDS RESEARCH (2012)
InterPro in 2011: new developments in the family and domain prediction database
Sarah Hunter et al.
NUCLEIC ACIDS RESEARCH (2012)
The Pfam protein families database
Marco Punta et al.
NUCLEIC ACIDS RESEARCH (2012)
Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa
Feng Cheng et al.
PLOS ONE (2012)
Localization of high level of sequence conservation and divergence regions in cotton
Kai Wang et al.
THEORETICAL AND APPLIED GENETICS (2012)
NAC proteins: regulation and role in stress tolerance
Swati Puranik et al.
TRENDS IN PLANT SCIENCE (2012)
Cotton fiber: a powerful single-cell model for cell wall and cellulose research
Candace H. Haigler et al.
FRONTIERS IN PLANT SCIENCE (2012)
How cotton fibers elongate: a tale of linear cell-growth mode
Yong-Mei Qin et al.
CURRENT OPINION IN PLANT BIOLOGY (2011)
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
Xiangchao Gan et al.
NATURE (2011)
Genome sequencing reveals insights into physiology and longevity of the naked mole rat
Eun Bae Kim et al.
NATURE (2011)
The genome of the mesopolyploid crop species Brassica rapa
Xiaowu Wang et al.
NATURE GENETICS (2011)
HMMER web server: interactive sequence similarity searching
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2011)
GhMYB25-like: a key factor in early cotton fibre development
Sally-Ann Walford et al.
PLANT JOURNAL (2011)
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
Likun Wang et al.
BIOINFORMATICS (2010)
Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton
Kai Wang et al.
CHROMOSOMA (2010)
De novo assembly of human genomes with massively parallel short read sequencing
Ruiqiang Li et al.
GENOME RESEARCH (2010)
Developmental and molecular physiological evidence for the role of phosphoenolpyruvate carboxylase in rapid cotton fibre elongation
Xiao-Rong Li et al.
JOURNAL OF EXPERIMENTAL BOTANY (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs
Margaret R. Woodhouse et al.
PLOS BIOLOGY (2010)
The Role of Hybridization in Plant Speciation
Pamela S. Soltis et al.
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
Infernal 1.0: inference of RNA alignments
Eric P. Nawrocki et al.
BIOINFORMATICS (2009)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
A preliminary analysis of genome structure and composition in Gossypium hirsutum
Wangzhen Guo et al.
BMC GENOMICS (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
Toward Sequencing cotton (Gossypium) Genomes
Z. Jeffrey Chen et al.
PLANT PHYSIOLOGY (2007)
The evolutionary consequences of polyploidy
Sarah P. Otto
CELL (2007)
Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype
Robert T. Gaeta et al.
PLANT CELL (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
Xiao-Jing Yu et al.
GENOMICS (2006)
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
M Stanke et al.
BMC BIOINFORMATICS (2006)
Arabidopsis and tobacco plants ectopically expressing the soybean antiquitin-like ALDH7 gene display enhanced tolerance to drought, salinity, and oxidative stress
Simone M. Rodrigues et al.
JOURNAL OF EXPERIMENTAL BOTANY (2006)
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
JL Wang et al.
GENETICS (2006)
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
JZ Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
BIOINFORMATICS (2005)
Rfam: annotating non-coding RNAs in complete genomes
S Griffiths-Jones et al.
NUCLEIC ACIDS RESEARCH (2005)
MAPMAN:: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
O Thimm et al.
PLANT JOURNAL (2004)
Control of plant trichome development by a cotton fiber MYB gene
S Wang et al.
PLANT CELL (2004)
TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
WH Majoros et al.
BIOINFORMATICS (2004)
GeneWise and genomewise
E Birney et al.
GENOME RESEARCH (2004)
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
WJ Kent et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
KL Adams et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Rate variation among nuclear genes and the age of polyploidy in Gossypium
DS Senchina et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
MapChart: Software for the graphical presentation of linkage maps and QTLs
RE Voorrips
JOURNAL OF HEREDITY (2002)
Polyploid formation in cotton is not accompanied by rapid genomic changes
B Liu et al.
GENOME (2001)