4.8 Article

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Co-Occurring Anammox, Denitrification, and Codenitrification in Agricultural Soils

Andrew Long et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Denitrifying Alphaproteobacteria from the Arabian Sea That Express nosZ, the Gene Encoding Nitrous Oxide Reductase, in Oxic and Suboxic Waters

Michael Wyman et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Review Microbiology

Pseudomonas aeruginosa Twitching Motility: Type IV Pili in Action

Lori L. Burrows

ANNUAL REVIEW OF MICROBIOLOGY, VOL 66 (2012)

Article Oceanography

Widespread functional anoxia in the oxygen minimum zone of the Eastern South Pacific

Bo Thamdrup et al.

DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2012)

Article Microbiology

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

Frank J. Stewart et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Review Microbiology

Oxygen minimum zones harbour novel viral communities with low diversity

Noriko Cassman et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Review Immunology

The interconnection between biofilm formation and horizontal gene transfer

Jonas Stenlokke Madsen et al.

FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY (2012)

Article Microbiology

Free-living and aggregate-associated Planctomycetes in the Black Sea

Clara A. Fuchsman et al.

FEMS MICROBIOLOGY ECOLOGY (2012)

Article Ecology

Nitrite oxidation in the Namibian oxygen minimum zone

Jessika Fuessel et al.

ISME JOURNAL (2012)

Article Limnology

Anammox and denitrification in the oxygen minimum zone of the eastern South Pacific

Tage Dalsgaard et al.

LIMNOLOGY AND OCEANOGRAPHY (2012)

Article Multidisciplinary Sciences

Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research

Doyle V. Ward et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Metagenomic Exploration of Viruses throughout the Indian Ocean

Shannon J. Williamson et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

Steffen Leth Jorgensen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Microbial oceanography of anoxic oxygen minimum zones

Osvaldo Ulloa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Multidisciplinary Sciences

Marine Microbes See a Sea of Gradients

Roman Stocker

SCIENCE (2012)

Review Geochemistry & Geophysics

Nitrogen Cycle of the Open Ocean: From Genes to Ecosystems

Jonathan P. Zehr et al.

ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)

Article Biochemistry & Molecular Biology

Integrative analysis of environmental sequences using MEGAN4

Daniel H. Huson et al.

GENOME RESEARCH (2011)

Article Geosciences, Multidisciplinary

Role of free-living and particle-attached bacteria in the recycling and export of organic material in the Hudson Bay system

Amandine Lapoussiere et al.

JOURNAL OF MARINE SYSTEMS (2011)

Article Multidisciplinary Sciences

The Phylogenetic Diversity of Metagenomes

Steven W. Kembel et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Selfish genetic elements, genetic conflict, and evolutionary innovation

John H. Werren

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Bacterial community assembly based on functional genes rather than species

Catherine Burke et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

Brandon K. Swan et al.

SCIENCE (2011)

Article Biochemical Research Methods

baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data

Thomas J. Hardcastle et al.

BMC BIOINFORMATICS (2010)

Article Microbiology

Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea

Mia M. Bengtsson et al.

BMC MICROBIOLOGY (2010)

Article Microbiology

Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia

Elena Zaikova et al.

ENVIRONMENTAL MICROBIOLOGY (2010)

Article Microbiology

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

Rachel S. Poretsky et al.

ENVIRONMENTAL MICROBIOLOGY (2010)

Article Multidisciplinary Sciences

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

Katharina F. Ettwig et al.

NATURE (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

Transposases are the most abundant, most ubiquitous genes in nature

Ramy K. Aziz et al.

NUCLEIC ACIDS RESEARCH (2010)

Review Biology

Endosymbiotic associations within protists

Eva C. M. Nowack et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)

Article Multidisciplinary Sciences

A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast

Don E. Canfield et al.

SCIENCE (2010)

Review Environmental Sciences

Ecological consequences of bacterioplankton lifestyles: changes in concepts are needed

Hans-Peter Grossart

ENVIRONMENTAL MICROBIOLOGY REPORTS (2010)

Article Biotechnology & Applied Microbiology

Comparative Metagenomic Analysis of a Microbial Community Residing at a Depth of 4,000 Meters at Station ALOHA in the North Pacific Subtropical Gyre

Konstantinos T. Konstantinidis et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Ecology

Microbial community structure in the North Pacific ocean

Mark V. Brown et al.

ISME JOURNAL (2009)

Article Multidisciplinary Sciences

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

Gaute Lavik et al.

NATURE (2009)

Article Multidisciplinary Sciences

New Insights into the Diversity of Marine Picoeukaryotes

Fabrice Not et al.

PLOS ONE (2009)

Article Multidisciplinary Sciences

The genomic basis of trophic strategy in marine bacteria

Federico M. Lauro et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

Phyllis Lam et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

David A. Walsh et al.

SCIENCE (2009)

Article Biology

Abdominal setae and midgut bacteria of the mudshrimp Pestarella tyrrhena

Alexandra Demiri et al.

CENTRAL EUROPEAN JOURNAL OF BIOLOGY (2009)

Article Microbiology

An assessment of actinobacterial diversity in the marine environment

Paul R. Jensen et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2008)

Article Ecology

Comparative actinomycete diversity in marine sediments

Alejandra Prieto-Davo et al.

AQUATIC MICROBIAL ECOLOGY (2008)

Article Microbiology

Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific

Heike Stevens et al.

ENVIRONMENTAL MICROBIOLOGY (2008)

Article Geosciences, Multidisciplinary

Heterogeneous archaeal communities in the particle-rich environment of an arctic shelf ecosystem

Pierre E. Galand et al.

JOURNAL OF MARINE SYSTEMS (2008)

Article Biochemistry & Molecular Biology

The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli

Matthew F. Traxler et al.

MOLECULAR MICROBIOLOGY (2008)

Review Microbiology

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

Celine Brochier-Armanet et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

Microbial community gene expression in ocean surface waters

Jorge. Frias-Lopez et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Endogenous oxidative stress produces diversity and adaptability in biofilm communities

Blaise R. Boles et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches

Roman Stocker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Oceanography

Oxygen minimum zones in the eastern tropical Atlantic and Pacific oceans

Johannes Karstensen et al.

PROGRESS IN OCEANOGRAPHY (2008)

Review Microbiology

Transcription profiling of the stringent response in Escherichia coli

Tim Durfee et al.

JOURNAL OF BACTERIOLOGY (2008)

Article Multidisciplinary Sciences

Microbial population structures in the deep marine biosphere

Julie A. Huber et al.

SCIENCE (2007)

Article Biotechnology & Applied Microbiology

Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system

Dagmar Woebken et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Biochemistry & Molecular Biology

The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific

Douglas B. Rusch et al.

PLOS BIOLOGY (2007)

Article Limnology

Anaerobic ammonium oxidation in the oxygen-deficient waters off northern Chile

Bo Thamdrup et al.

LIMNOLOGY AND OCEANOGRAPHY (2006)

Article Microbiology

Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom

R. M. Morris et al.

ENVIRONMENTAL MICROBIOLOGY (2006)

Article Biochemical Research Methods

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li et al.

BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

A microbial consortium couples anaerobic methane oxidation to denitrification

AA Raghoebarsing et al.

NATURE (2006)

Article Multidisciplinary Sciences

Community genomics among stratified microbial assemblages in the ocean's interior

EF DeLong et al.

SCIENCE (2006)

Article Biotechnology & Applied Microbiology

Antagonistic interactions among marine bacteria impede the proliferation of Vibrio cholerae

RA Long et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

UniFrac: a new phylogenetic method for comparing microbial communities

C Lozupone et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

Genome streamlining in a cosmopolitan oceanic bacterium

SJ Giovannoni et al.

SCIENCE (2005)

Article Biotechnology & Applied Microbiology

Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean

RR Malmstrom et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

High-temperature-induced transposition of insertion elements in Burkholderia multivorans ATCC 17616

Y Ohtsubo et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Review Microbiology

Diversify or die: Generation of diversity in response to stress

A Aertsen et al.

CRITICAL REVIEWS IN MICROBIOLOGY (2005)

Article Astronomy & Astrophysics

Domain evolution and functional diversification of sulfite reductases

A Dhillon et al.

ASTROBIOLOGY (2005)

Correction Multidisciplinary Sciences

Self-generated diversity produces 'insurance effects' in biofilm communities (vol 101, pg 16630, 2004)

BR Boles et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Microbiology

Marine actinobacteria: Perspectives, challenges, future directions

AT Bull et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2005)

Article Biochemistry & Molecular Biology

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

R Overbeek et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Multidisciplinary Sciences

Environmental genome shotgun sequencing of the Sargasso Sea

JC Venter et al.

SCIENCE (2004)

Article Microbiology

Antagonistic activity of bacteria isolated from organic aggregates of the German Wadden Sea

HP Grossart et al.

FEMS MICROBIOLOGY ECOLOGY (2004)

Article Multidisciplinary Sciences

Self-generated diversity produces insurance effects in biofilm communities

BR Boles et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Ecology

Microbial dynamics on diatom aggregates in Oresund, Denmark

HP Grossart et al.

MARINE ECOLOGY PROGRESS SERIES (2003)

Article Biotechnology & Applied Microbiology

Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil

C Rösch et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

Review Ecology

Microbial ecology of organic aggregates in aquatic ecosystems

M Simon et al.

AQUATIC MICROBIAL ECOLOGY (2002)

Review Multidisciplinary Sciences

Microbial behavior in a heterogeneous world

T Fenchel

SCIENCE (2002)

Article Biotechnology & Applied Microbiology

Antagonistic interactions among marine pelagic bacteria

RA Long et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)

Article Ecology

Eppur si muove: many water column bacteria are motile

T Fenchel

AQUATIC MICROBIAL ECOLOGY (2001)

Article Microbiology

Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA

BC Crump et al.

FEMS MICROBIOLOGY ECOLOGY (2000)