相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation
Michael J. Wilkins et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens
Carla Risso et al.
BMC GENOMICS (2009)
Genome-scale constraint-based modeling of Geobacter metallireducens
Jun Sun et al.
BMC SYSTEMS BIOLOGY (2009)
Influence of Heterogeneous Ammonium Availability on Bacterial Community Structure and the Expression of Nitrogen Fixation and Ammonium Transporter Genes during in Situ Bioremediation of Uranium-Contaminated Groundwater
Paula J. Mouser et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2009)
Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments
Dawn E. Holmes et al.
ISME JOURNAL (2009)
Applications of genome-scale metabolic reconstructions
Matthew A. Oberhardt et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation
Timothy D. Scheibe et al.
MICROBIAL BIOTECHNOLOGY (2009)
Long-term dynamics of uranium reduction/reoxidation under low sulfate conditions
John Komlos et al.
GEOCHIMICA ET COSMOCHIMICA ACTA (2008)
Is maximization of molar yield in metabolic networks favoured by evolution?
Stefan Schuster et al.
JOURNAL OF THEORETICAL BIOLOGY (2008)
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
Adam M. Feist et al.
NATURE BIOTECHNOLOGY (2008)
Dynamic metabolic engineering for increasing bioprocess productivity
Nikolaos Anesiadis et al.
METABOLIC ENGINEERING (2008)
Geobacter sulfurreducens strain engineered for increased rates of respiration
Mounir Izallalen et al.
METABOLIC ENGINEERING (2008)
Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens
Daniel Segura et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments
Dawn E. Holmes et al.
ISME JOURNAL (2007)
Uranium removal from groundwater via in situ biostimulation: Field-scale modeling of transport and biological processes
Steven B. Yabusaki et al.
JOURNAL OF CONTAMINANT HYDROLOGY (2007)
Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture
Jared L. Hjersted et al.
BIOTECHNOLOGY AND BIOENGINEERING (2007)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M. Feist et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Metabolic modeling of a mutualistic microbial community
Sergey Stolyar et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Iron-reducing microorganisms in a landfill leachate-polluted aquifer: Complementing culture-independent information with enrichments and isolations
Bin Lin et al.
GEOMICROBIOLOGY JOURNAL (2007)
Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling
R Mahadevan et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems
P Pharkya et al.
METABOLIC ENGINEERING (2006)
Microbial incorporation of 13C-labeled acetate at the field scale:: Detection of microbes responsible for reduction of U(VI)
YJ Chang et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2005)
Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site
HA Vrionis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens
BA Methé et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments
DE Holmes et al.
MICROBIAL ECOLOGY (2004)
OptStrain: A computational framework for redesign of microbial production systems
P Pharkya et al.
GENOME RESEARCH (2004)
Evolution of cross-feeding in microbial populations
T Pfeiffer et al.
AMERICAN NATURALIST (2004)
Exploring the overproduction of amino acids using the bilevel optimization framework OptKnock
P Pharkya et al.
BIOTECHNOLOGY AND BIOENGINEERING (2003)
OptKnock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
AP Burgard et al.
BIOTECHNOLOGY AND BIOENGINEERING (2003)
Genome of Geobacter sulfurreducens:: Metal reduction in subsurface environments
BA Methé et al.
SCIENCE (2003)
Cleaning up with genomics: Applying molecular biology to bioremediation
DR Lovley
NATURE REVIEWS MICROBIOLOGY (2003)
Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer
RT Anderson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Thirteen years of building constraint-based in silico models of Escherichia coli
JL Reed et al.
JOURNAL OF BACTERIOLOGY (2003)
Rhodoferax ferrireducens sp nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III)
KT Finneran et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)
An evolutionary scenario for the transition to undifferentiated multicellularity
T Pfeiffer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI)
L Petrie et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
JL Reed et al.
GENOME BIOLOGY (2003)
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
RU Ibarra et al.
NATURE (2002)
Dynamic flux balance analysis of diauxic growth in Escherichia coli
R Mahadevan et al.
BIOPHYSICAL JOURNAL (2002)
Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments
DE Holmes et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Methanogenesis in a shallow sandy aquifer, Romo, Denmark
LK Hansen et al.
GEOCHIMICA ET COSMOCHIMICA ACTA (2001)
Cooperation and competition in the evolution of ATP-producing pathways
T Pfeiffer et al.
SCIENCE (2001)
分享论文
