期刊
MOLECULAR PHYLOGENETICS AND EVOLUTION
卷 87, 期 -, 页码 46-49出版社
ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.ympev.2015.03.008
关键词
Historical biogeography; Ancestral state reconstruction; Software
资金
- National Natural Science Foundation of China [31270241, 31100161]
- Specimen Platform of China, Teaching Specimen's sub-platform
We announce the release of Reconstruct Ancestral State in Phylogenies (RASP), a user-friendly software package for inferring historical biogeography through reconstructing ancestral geographic distributions on phylogenetic trees. RASP utilizes the widely used Statistical-Dispersal Vicariance Analysis (S-DIVA), the Dispersal-Extinction-Cladogenesis (DEC) model (Lagrange), a Statistical DEC model (S-DEC) and BayArea. It provides a graphical user interface (GUI) to specify a phylogenetic tree or set of trees and geographic distribution constraints, draws pie charts on the nodes of a phylogenetic tree to indicate levels of uncertainty, and generates high-quality exportable graphical results. RASP can run on both Windows and Mac OS X platforms. All documentation and source code for RASP is freely available at http://mnh.scu. edu.cn/soft/blog/RASP. (C) 2015 Elsevier Inc. All rights reserved.
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