相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Eight challenges in phylodynamic inference
Simon D. W. Frost et al.
EPIDEMICS (2015)
AliView: a fast and lightweight alignment viewer and editor for large datasets
Anders Larsson
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model
Denise Kuehnert et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2014)
Timing and Order of Transmission Events Is Not Directly Reflected in a Pathogen Phylogeny
Ethan Romero-Severson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates
Bram Vrancken et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Phylodynamic Inference for Structured Epidemiological Models
David A. Rasmussen et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
A Stochastic Simulator of Birth-Death Master Equations with Application to Phylodynamics
Timothy G. Vaughan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Mapping the Shapes of Phylogenetic Trees from Human and Zoonotic RNA Viruses
Art F. Y. Poon et al.
PLOS ONE (2013)
Modelling tree shape and structure in viral phylodynamics
Simon D. W. Frost et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)
Tanja Stadler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Approximate Bayesian Computation
Mikael Sunnaker et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Viral Phylodynamics
Erik M. Volz et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
Eric Talevich et al.
BMC BIOINFORMATICS (2012)
Complex Population Dynamics and the Coalescent Under Neutrality
Erik M. Volz
GENETICS (2012)
Phylogenetic Properties of RNA Viruses
Simone Pompei et al.
PLOS ONE (2012)
Phylodynamic Inference and Model Assessment with Approximate Bayesian Computation: Influenza as a Case Study
Oliver Ratmann et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Inferring Epidemic Contact Structure from Phylogenetic Trees
Gabriel E. Leventhal et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
INDELible: A Flexible Simulator of Biological Sequence Evolution
William Fletcher et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Temporal and spatial dynamics of human immunodeficiency virus type 1 circulating recombinant forms 08_BC and 07_BC in Asia
Kok Keng Tee et al.
JOURNAL OF VIROLOGY (2008)
Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans
Katia Koelle et al.
SCIENCE (2006)
Stochastic or deterministic: what is the effective population size of HIV-1?
Roger D. Kouyos et al.
TRENDS IN MICROBIOLOGY (2006)
Inferring phylogeny despite incomplete lineage sorting
WP Maddison et al.
SYSTEMATIC BIOLOGY (2006)
On statistical tests of phylogenetic tree imbalance:: The Sackin and other indices revisited
MGB Blum et al.
MATHEMATICAL BIOSCIENCES (2005)
Bayesian coalescent inference of past population dynamics from molecular sequences
AJ Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Unifying the epidemiological and evolutionary dynamics of pathogens
BT Grenfell et al.
SCIENCE (2004)
Markov chain Monte Carlo without likelihoods
P Marjoram et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant
S Piyasirisilp et al.
JOURNAL OF VIROLOGY (2000)
Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies
A Rambaut
BIOINFORMATICS (2000)
Distributions of cherries for two models of trees
A McKenzie et al.
MATHEMATICAL BIOSCIENCES (2000)
分享论文
