期刊
HUMAN MUTATION
卷 30, 期 6, 页码 968-977出版社
WILEY
DOI: 10.1002/humu.20973
关键词
bioinformatics; data model; genotype-phenotype; database
资金
- University of Leicester
- European Bioinformatics Institute
- Karolinska Institute
- University of Helsinki
- National Center for Biotechnology Information
- Cold Spring Harbor Laboratory Stanford University
- Yale University
- Shanghai Center for Bioinformation Technology
- Shanghai Information Center for Life Sciences
- Tsinghua University
- Indian Institute of Genomics & Integrative Biology
- Japan National Institute of Genetics
- Japan Science and Technology Agency
- Japanese National Cancer Center Research Institute
- Tokyo Institute of Technology
- Japanese Ministry of Economy Trade and Industry
- New Energy and Industrial Technology Development Organization
- Research Council of Norway
- Research Council of Norway and Bergen Forskningsstiftelse
- GlaxoSmithKline
- NIH [U01GM61374]
- NSF [BCS0096588]
- European Community [QLG2-CT-2002-01254, 200754]
Torrents of genotype-phenotype data are being generated, all of which must be captured, processed, integrated, and exploited. To do this optimally requires the use of standard and interoperable object models, providing a description of how to partition the total spectrum of information being dealt with into elemental objects (such as alleles, genotypes, phenotype values, methods) with precisely stated logical interrelationships (such as A objects are made up from one or more B objects). We herein propose the Phenotype and Genotype Experiment Object Model (PaGE-OM; www.pageom.org), which has been tested and implemented in conjunction with several major databases, and approved as a standard by the Object Management Group (OMG). PaGE-OM is open,source, ready for use by the wider community, and can be further developed as needs arise. It will help to improve information management, assist data integration, and simplify the task of informatics resource design and construction for genotype and phenotype data projects. Hum Mutat 30, 968-977, 2009. (C) 2009 Wiley-Liss, Inc.
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