Engineering, Biomedical

Article Engineering, Biomedical

Unified Focal loss: Generalising Dice and cross entropy-based losses to handle class imbalanced medical image segmentation

Michael Yeung, Evis Sala, Carola-Bibiane Schoenlieb, Leonardo Rundo

Summary: Automatic segmentation methods using deep neural networks have advanced medical image analysis. However, class imbalance in medical datasets poses a challenge for model convergence. In this study, we propose the Unified Focal loss function to handle class imbalance and demonstrate its superior performance compared to other loss functions on various medical imaging datasets.

COMPUTERIZED MEDICAL IMAGING AND GRAPHICS (2022)

Article Engineering, Biomedical

Smart/stimuli-responsive hydrogels: Cutting-edge platforms for tissue engineering and other biomedical applications

Hussein M. El-Husseiny, Eman A. Mady, Lina Hamabe, Amira Abugomaa, Kazumi Shimada, Tomohiko Yoshida, Takashi Tanaka, Aimi Yokoi, Mohamed Elbadawy, Ryou Tanaka

Summary: Biomedicine and tissue regeneration have made significant advancements in recent years, opening up possibilities for improving the restoration of impaired tissues and their functions. Smart/stimuli-responsive hydrogels, as three-dimensional bioscaffolds, show great potential in tissue engineering and other biomedical applications. This review focuses on the synthesis schemes and responsiveness mechanisms of smart/stimuli-responsive hydrogels, as well as their potential in tissue engineering and other biomedical applications.

MATERIALS TODAY BIO (2022)

Review Engineering, Biomedical

Role of bioglass in enamel remineralization: Existing strategies and future prospects-A narrative review

Ramya Ramadoss, Rajashree Padmanaban, Balakumar Subramanian

Summary: Enamel remineralization is a challenging process due to the complex organized hierarchical microstructure of enamel and its inability to remodel like other mineralized tissues.

JOURNAL OF BIOMEDICAL MATERIALS RESEARCH PART B-APPLIED BIOMATERIALS (2022)

Article Engineering, Biomedical

Exosomes: Small vesicles with big roles in cancer, vaccine development, and therapeutics

Abhimanyu Thakur, Diana Carolina Parra, Pedram Motallebnejad, Marcelo Brocchi, Huanhuan Joyce Chen

Summary: Exosomes are tiny extracellular vesicles that carry various components, such as proteins, lipids, and nucleic acids, and play a crucial role in the malignant progression of cancer. Due to their ability to transport drugs and molecular information, exosomes have been considered as a novel tool for cancer therapeutics.

BIOACTIVE MATERIALS (2022)

Article Engineering, Biomedical

How far is Lignin from being a biomedical material?

Sigit Sugiarto, Yihao Leow, Chong Li Tan, Guan Wang, Dan Kai

Summary: The review highlights the potential of utilizing lignin as a versatile biomaterial and discusses the challenges and outlook in developing and enhancing biomaterials through chemical modifications of lignin.

BIOACTIVE MATERIALS (2022)

Article Engineering, Biomedical

Peptide-based nanomaterials: Self-assembly, properties and applications

Tong Li, Xian-Mao Lu, Ming-Rong Zhang, Kuan Hu, Zhou Li

Summary: Peptide-based self-assembly nanomaterials, with diverse structures and functionalities, play a significant role in bioapplications. This review provides an overview of the recent advances in peptide-based self-assembly nanostructures, focusing on the driving forces and assembly mechanisms. It also summarizes the synthesis, properties, and applications of functional peptide nanomaterials. The challenges and future prospects of peptide-based nanomaterials are discussed.

BIOACTIVE MATERIALS (2022)

Article Biology

Directional mutation and crossover boosted ant colony optimization with application to COVID-19 X-ray image segmentation

Ailiang Qi, Dong Zhao, Fanhua Yu, Ali Asghar Heidari, Zongda Wu, Zhennao Cai, Fayadh Alenezi, Romany F. Mansour, Huiling Chen, Mayun Chen

Summary: This paper focuses on the study of COVID-19 X-ray image segmentation technology. A new multilevel image segmentation method based on the swarm intelligence algorithm is proposed, along with a designed image segmentation model. Experimental results show that the proposed model achieves more stable and superior segmentation results at different threshold levels.

COMPUTERS IN BIOLOGY AND MEDICINE (2022)

Review Biology

Generative Adversarial Networks in Medical Image augmentation: A review

Yizhou Chen, Xu-Hua Yang, Zihan Wei, Ali Asghar Heidari, Nenggan Zheng, Zhicheng Li, Huiling Chen, Haigen Hu, Qianwei Zhou, Qiu Guan

Summary: This paper provides a comprehensive review and analysis of medical image augmentation, focusing on the advantages of different augmentation models, loss functions, and evaluation metrics. It explores the potential role of augmented models in limited training set scenarios and discusses the limitations and research directions in this field. The research shows that this field is still actively developing.

COMPUTERS IN BIOLOGY AND MEDICINE (2022)

Article Engineering, Biomedical

Amelioration of Alzheimer's disease pathology by mitophagy inducers identified via machine learning and a cross-species workflow

Chenglong Xie, Xu-Xu Zhuang, Zhangming Niu, Ruixue Ai, Sofie Lautrup, Shuangjia Zheng, Yinghui Jiang, Ruiyu Han, Tanima Sen Gupta, Shuqin Cao, Maria Jose Lagartos-Donate, Cui-Zan Cai, Li-Ming Xie, Domenica Caponio, Wen-Wen Wang, Tomas Schmauck-Medina, Jianying Zhang, He-ling Wang, Guofeng Lou, Xianglu Xiao, Wenhua Zheng, Konstantinos Palikaras, Guang Yang, Kim A. Caldwell, Guy A. Caldwell, Han-Ming Shen, Hilde Nilsen, Jia-Hong Lu, Evandro F. Fang

Summary: This study utilized machine learning and a cross-species approach to identify and validate two potent mitophagy inducers. These compounds improved neuronal survival and functionality, abrogated pathology in AD models, and enhanced memory.

NATURE BIOMEDICAL ENGINEERING (2022)

Article Biology

Multilevel threshold image segmentation for COVID-19 chest radiography: A framework using horizontal and vertical multiverse optimization

Hang Su, Dong Zhao, Hela Elmannai, Ali Asghar Heidari, Sami Bourouis, Zongda Wu, Zhennao Cai, Wenyong Gui, Mayun Chen

Summary: COVID-19 is spreading globally, and the diagnosis is usually based on examining chest radiographs. Manual processing of the images is not efficient and accurate enough. To improve the efficiency, this research proposes a multilevel thresholding image segmentation method based on an enhanced multiverse optimizer. The method achieves better segmentation results and can help medical organizations process COVID-19 chest radiography effectively.

COMPUTERS IN BIOLOGY AND MEDICINE (2022)

Article Engineering, Biomedical

A wearable electrochemical biosensor for the monitoring of metabolites and nutrients

Minqiang Wang, Yiran Yang, Jihong Min, Yu Song, Jiaobing Tu, Daniel Mukasa, Cui Ye, Changhao Xu, Nicole Heflin, Jeannine S. McCune, Tzung K. Hsiai, Zhaoping Li, Wei Gao

Summary: A wearable electrochemical biosensor has been developed to continuously detect trace levels of multiple metabolites and nutrients in sweat during physical exercise and at rest, providing real-time monitoring and assessment of health risks and nutritional status.

NATURE BIOMEDICAL ENGINEERING (2022)

Article Engineering, Biomedical

2021 ELSO Adult and Pediatric Anticoagulation Guidelines

Ali B. McMichael, Lindsay M. Ryerson, Damian Ratano, Eddy Fan, David Faraoni, Gail M. Annich, Graeme MacLaren, Giles J. Peek, Marie E. Steiner, Ravi R. Thiagarajan

Summary: These guidelines provide educational information for adult and pediatric anticoagulation in extracorporeal membrane oxygenation, aiming to support physicians and other health professionals in assessing and managing patients undergoing ECLS / ECMO. However, they are not consensus recommendations and do not guarantee successful outcomes. Adherence to guidelines should be coupled with clinical judgment and individual patient consultation.

ASAIO JOURNAL (2022)

Article Computer Science, Artificial Intelligence

Recent advances and clinical applications of deep learning in medical image analysis

Xuxin Chen, Ximin Wang, Ke Zhang, Kar-Ming Fung, Theresa C. Thai, Kathleen Moore, Robert S. Mannel, Hong Liu, Bin Zheng, Yuchen Qiu

Summary: This paper reviews the recent studies on applying deep learning methods in medical image analysis, emphasizing the latest progress and contributions of state-of-the-art unsupervised and semi-supervised deep learning in this field. It also discusses major technical challenges and suggests possible solutions for future research efforts.

MEDICAL IMAGE ANALYSIS (2022)

Article Biotechnology & Applied Microbiology

Chitosan nanofiber biocomposites for potential wound healing applications: Antioxidant activity with synergic antibacterial effect

Mitra Bagheri, Majid Validi, Abolfazl Gholipour, Pooyan Makvandi, Esmaeel Sharifi

Summary: The study developed chitosan/polyethylene oxide nanofibers embedded with antibacterial silver and zinc oxide nanoparticles, showing high antioxidant and antibacterial activity against common hospital-acquired infections. The optimal concentrations of ZnONPs and AgNPs were determined to have no cytotoxic effects on fibroblast cells, while also exhibiting good blood compatibility and promoting fibroblast migration and proliferation at wound sites. The nanofibrous mats demonstrated potential as effective wound dressings.

BIOENGINEERING & TRANSLATIONAL MEDICINE (2022)

Article Engineering, Biomedical

Ultrasmall Fe-doped carbon dots nanozymes for photoenhanced antibacterial therapy and wound healing

Yunhang Liu, Bolong Xu, Mingzhu Lu, Shanshan Li, Juan Guo, Fangzhou Chen, Xiaolu Xiong, Zhe Yin, Huiyu Liu, Dongsheng Zhou

Summary: Due to increasing antibiotic resistance, alternative antibacterial strategies are urgently needed. This study developed iron-doped carbon dots with photothermal conversion and photoenhanced enzyme-like properties for efficient antibacterial therapy and wound healing. The iron-doped carbon dots killed bacteria by generating heat and reactive oxygen species, and promoted wound healing through preventing infection, enhancing tissue proliferation, and inducing angiogenesis. This study is of great importance for finding new antibacterial approaches.

BIOACTIVE MATERIALS (2022)

Article Engineering, Biomedical

Promoting the healing of infected diabetic wound by an anti-bacterial and nano-enzyme-containing hydrogel with inflammation-suppressing, ROS-scavenging, oxygen and nitric oxide-generating properties

Chenxi Tu, Huidan Lu, Tong Zhou, Wanying Zhang, Liwen Deng, Wangbei Cao, Zhijian Yang, Zhaolong Wang, Xinyu Wu, Jie Ding, Feng Xu, Changyou Gao

Summary: In this study, a multifunctional hydrogel was designed and prepared for the treatment of diabetic wounds. The hydrogel showed abilities in scavenging ROS, killing bacteria, and protecting cells against oxidative stress. It also promoted wound healing and reduced inflammation.

BIOMATERIALS (2022)

Article Engineering, Biomedical

Supramolecular Thermo-Contracting Adhesive Hydrogel with Self-Removability Simultaneously Enhancing Noninvasive Wound Closure and MRSA-Infected Wound Healing

Rui Yu, Meng Li, Zhenlong Li, Guoying Pan, Yuqing Liang, Baolin Guo

Summary: A novel supramolecular poly(N-isopropylacrylamide) hybrid hydrogel dressing with thermal contraction and tissue adhesion properties, as well as multiple mechanical and biological properties, is developed to achieve noninvasive wound closure and enhance wound healing simultaneously.

ADVANCED HEALTHCARE MATERIALS (2022)

Review Engineering, Biomedical

Nanocatalyst-Mediated Chemodynamic Tumor Therapy

Lu Zhang, Chu-Xin Li, Shuang-Shuang Wan, Xian-Zheng Zhang

Summary: Chemodynamic therapy (CDT) is a novel cancer therapeutic strategy using a Fenton or Fenton-like reaction to generate highly cytotoxic hydroxyl radicals (·OH) from endogenous hydrogen peroxide (H2O2) to kill cancer cells, but its low catalytic efficiency and off-target side effects limit its biomedical application, so various strategies are needed to enhance its therapeutic effect.

ADVANCED HEALTHCARE MATERIALS (2022)

Article Engineering, Biomedical

Advanced application of stimuli-responsive drug delivery system for inflammatory arthritis treatment

Mi Zhang, Wenhui Hu, Chenhui Cai, Yu Wu, Jianmei Li, Shiwu Dong

Summary: Inflammatory arthritis is a leading cause of disability in the elderly, and the available treatment options are limited. To address this issue, researchers propose using stimuli-responsive nanomaterials to manage inflammatory arthritis, releasing therapeutic medications by triggering pathological changes.

MATERIALS TODAY BIO (2022)

Article Engineering, Biomedical

A multi-organ chip with matured tissue niches linked by vascular flow

Kacey Ronaldson-Bouchard, Diogo Teles, Keith Yeager, Daniel Naveed Tavakol, Yimu Zhao, Alan Chramiec, Somnath Tagore, Max Summers, Sophia Stylianos, Manuel Tamargo, Busub Marcus Lee, Susan P. Halligan, Erbil Hasan Abaci, Zongyou Guo, Joanna Jackow, Alberto Pappalardo, Jerry Shih, Rajesh K. Soni, Shivam Sonar, Carrie German, Angela M. Christiano, Andrea Califano, Karen K. Hirschi, Christopher S. Chen, Andrzej Przekwas, Gordana Vunjak-Novakovic

Summary: This study reports the development and application of a tissue-chip system where matured human heart, liver, bone, and skin tissue niches are interconnected by recirculating vascular flow, allowing for the replication of interdependent organ functions and potentially enhancing clinical applicability.

NATURE BIOMEDICAL ENGINEERING (2022)