4.5 Article

Massive Gene Transfer and Extensive RNA Editing of a Symbiotic Dinoflagellate Plastid Genome

Related references

Note: Only part of the references are listed.
Review Plant Sciences

Photosystem II Assembly: From Cyanobacteria to Plants

Joerg Nickelsen et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64 (2013)

Article Biochemistry & Molecular Biology

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

Eiichi Shoguchi et al.

CURRENT BIOLOGY (2013)

Article Evolutionary Biology

Massively Convergent Evolution for Ribosomal Protein Gene Content in Plastid and Mitochondrial Genomes

Uwe-G Maier et al.

GENOME BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

A Tertiary Plastid Gains RNA Editing in Its New Host

Christopher J. Jackson et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Split Photosystem Protein, Linear-Mapping Topology, and Growth of Structural Complexity in the Plastid Genome of Chromera velia

Jan Janouskovec et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

RNase J participates in a pentatricopeptide repeat protein-mediated 5' end maturation of chloroplast mRNAs

Scott Luro et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Cell Biology

What makes a chloroplast? Reconstructing the establishment of photosynthetic symbioses

Richard G. Dorrell et al.

JOURNAL OF CELL SCIENCE (2012)

Review Neurosciences

A-to-I RNA Editing: Effects on Proteins Key to Neural Excitability

Joshua J. C. Rosenthal et al.

NEURON (2012)

Article Multidisciplinary Sciences

Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors

Richard G. Dorrell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Microbiology

Dinoflagellate Genome Evolution

Jennifer H. Wisecaver et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 65 (2011)

Article Evolutionary Biology

Evolution of light-harvesting complex proteins from Chl c-containing algae

Gabriel E. Hoffman et al.

BMC EVOLUTIONARY BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

Riu Yamashita et al.

GENOME RESEARCH (2011)

Review Plant Sciences

Photosystem I: Its biogenesis and function in higher plants

Mark Aurel Schoettler et al.

JOURNAL OF PLANT PHYSIOLOGY (2011)

Article Plant Sciences

Mechanism of Plastid Division: From a Bacterium to an Organelle

Shin-ya Miyagishima

PLANT PHYSIOLOGY (2011)

Review Plant Sciences

A structural phylogenetic map for chloroplast photosynthesis

John F. Allen et al.

TRENDS IN PLANT SCIENCE (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Long Transcripts from Dinoflagellate Chloroplast Minicircles Suggest Rolling Circle Transcription

Yunkun Dang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Plant Sciences

A long antisense RNA in plant chloroplasts

J. Georg et al.

NEW PHYTOLOGIST (2010)

Article Biochemistry & Molecular Biology

The Pfam protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2010)

Review Biology

The endosymbiotic origin, diversification and fate of plastids

Patrick J. Keeling

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)

Article Multidisciplinary Sciences

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

Jan Janouskovec et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

The replication of plastid minicircles involves rolling circle intermediates

Siu Kai Leung et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

The SWISS-MODEL Repository and associated resources

Florian Kiefer et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans and dinoflagellates

Julius Lukes et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Plant Sciences

The remarkable chloroplast genome of dinoflagellates

Christopher J. Howe et al.

JOURNAL OF EXPERIMENTAL BOTANY (2008)

Review Plant Sciences

Functional organization of a plant photosystem I: Evolution of a highly efficient photochemical machine

Alexey Amunts et al.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2008)

Article Multidisciplinary Sciences

Heat stress causes inhibition of the de novo synthesis of antenna proteins and photobleaching in cultured Symbiodinium

Shunichi Takahashi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Plant Sciences

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

Christian Schmitz-Linneweber et al.

TRENDS IN PLANT SCIENCE (2008)

Article Biochemical Research Methods

Clustal W and clustal X version 2.0

M. A. Larkin et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Pentatricopeptide repeat proteins in trypanosoma brucei function in mitochondrial ribosomes

Mascha Pusnik et al.

MOLECULAR AND CELLULAR BIOLOGY (2007)

Article Biochemistry & Molecular Biology

A hypothesis on the identification of the editing enzyme in plant organelles

Veronique Salone et al.

FEBS LETTERS (2007)

Article Biochemistry & Molecular Biology

KAAS: an automatic genome annotation and pathway reconstruction server

Yuki Moriya et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biotechnology & Applied Microbiology

Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes

Adrian C. Barbrook et al.

BMC GENOMICS (2006)

Article Biochemistry & Molecular Biology

Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium

YL Wang et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

P Schattner et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Migration of the plastid genome to the nucleus in a peridinin dinoflagellate

JD Hackett et al.

CURRENT BIOLOGY (2004)

Article Biochemistry & Molecular Biology

MATRAS: a program for protein 3D structure comparison

T Kawabata

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

ExPASy: the proteomics server for in-depth protein knowledge and analysis

E Gasteiger et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biology

Evolution of the chloroplast genome

CJ Howe et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES (2003)

Article Microbiology

Highly organized structure in the non-coding region of the psbA minicircle from clade C Symbiodinium

RB Moore et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)

Article Biochemistry & Molecular Biology

The Chlamydomonas reinhardtti plastid chromosome:: Islands of genes in a sea of repeats

JE Maul et al.

PLANT CELL (2002)

Article Biochemistry & Molecular Biology

Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates

SJ Lin et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their putative replicon origins

ZD Zhang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Biochemistry & Molecular Biology

Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum

AC Barbrook et al.

MOLECULAR GENETICS AND GENOMICS (2001)

Article Biochemistry & Molecular Biology

A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate

ZD Zhang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2001)

Review Biochemistry & Molecular Biology

Photosystem I: Function and physiology

PR Chitnis

ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY (2001)

Article Biology

The origin of alternation of generations in land plants: a focus on matrotrophy and hexose transport

LKE Graham et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2000)