Journal
GENOME
Volume 53, Issue 11, Pages 1017-1023Publisher
CANADIAN SCIENCE PUBLISHING
DOI: 10.1139/G10-057
Keywords
SNP discovery; association mapping; comparative genomics; second generation genome sequencing
Ask authors/readers for more resources
Association mapping currently relies on the identification of genetic markers. Several technologies have been adopted for genetic marker analysis, with single nucleotide polymorphisms ( SNPs) being the most popular where a reasonable quantity of genome sequence data are available. We describe several tools we have developed for the discovery, annotation, and visualization of molecular markers for association mapping. These include autoSNPdb for SNP discovery from assembled sequence data; TAGdb for the identification of gene specific paired read Illumina GAII data; CMap3D for the comparison of mapped genetic and physical markers; and BAC and Gene Annotator for the online annotation of genes and genomic sequences.
Authors
I am an author on this paper
Click your name to claim this paper and add it to your profile.
Reviews
Recommended
No Data Available