Related references
Note: Only part of the references are listed.CTCF-cohesin complex: architect of chromatin structure regulates V(D)J rearrangement
Ann J. Feeney et al.
CELL RESEARCH (2012)
CTCF: from insulators to alternative splicing regulation
Alberto R. Kornblihtt
CELL RESEARCH (2012)
Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements
Lucy W. Barrett et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2012)
The UCSC Genome Browser database: extensions and updates 2011
Timothy R. Dreszer et al.
NUCLEIC ACIDS RESEARCH (2012)
Ensembl 2012
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2012)
In the loop: long range chromatin interactions and gene regulation
Ann Dean
BRIEFINGS IN FUNCTIONAL GENOMICS (2011)
Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes (vol 18, pg 708, 2011)
David Martin et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
RSAT 2011: regulatory sequence analysis tools
Morgane Thomas-Chollier et al.
NUCLEIC ACIDS RESEARCH (2011)
Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus
Yoon Jung Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Roles of chromatin insulator proteins in higher-order chromatin organization and transcription regulation
Jutta Vogelmann et al.
NUCLEUS (2011)
Enhancers Multi-dimensional signal integrators
Fulai Jin et al.
TRANSCRIPTION-AUSTIN (2011)
OPINION Insulators and promoters: closer than we think
Jesse R. Raab et al.
NATURE REVIEWS GENETICS (2010)
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
Suresh Cuddapah et al.
GENOME RESEARCH (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Eukaryotic transcription factor binding sites - modeling and integrative search methods
Sridhar Hannenhalli
BIOINFORMATICS (2008)
An extended transcriptional network for pluripotency of embryonic stem cells
Jonghwan Kim et al.
CELL (2008)
A mechanism regulating the onset of Sox2 expression in the embryonic neural plate
Costis Papanayotou et al.
PLOS BIOLOGY (2008)
ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?
Peter Van Loo et al.
GENOME BIOLOGY (2008)
SCOPE:: a web server for practical de novo motif discovery
Jonathan M. Carlson et al.
NUCLEIC ACIDS RESEARCH (2007)
Multiple whole genome alignments and novel biomedical applications at the VISTA portal
Michael Brudno et al.
NUCLEIC ACIDS RESEARCH (2007)
Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting
Alona Sosinsky et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes
Gabriela Loots et al.
BIOINFORMATICS (2007)
VISTA Enhancer Browser - a database of tissue-specific human enhancers
Axel Visel et al.
NUCLEIC ACIDS RESEARCH (2007)
Convergence of Wnt and FGF signals in the genesis of posterior neural plate through activation of the Sox2 enhancer N-1
T Takemoto et al.
DEVELOPMENT (2006)
TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes
V. Matys et al.
NUCLEIC ACIDS RESEARCH (2006)
Using hexamers to predict cis-regulatory motifs in Drosophila
BY Chan et al.
BMC BIOINFORMATICS (2005)
Matlnspector and beyond: promoter analysis based on transcription factor binding sites
K Cartharius et al.
BIOINFORMATICS (2005)
Highly conserved non-coding sequences are associated with vertebrate development
A Woolfe et al.
PLOS BIOLOGY (2005)
Applied bioinformatics for the identification of regulatory elements
WW Wasserman et al.
NATURE REVIEWS GENETICS (2004)
Efficient identification of regulatory sequences in the chicken genome by a powerful combination of embryo electroporation and genome comparison
M Uchikawa et al.
MECHANISMS OF DEVELOPMENT (2004)
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
A Sandelin et al.
NUCLEIC ACIDS RESEARCH (2004)
MATCH™:: a tool for searching transcription factor binding sites in DNA sequences
AE Kel et al.
NUCLEIC ACIDS RESEARCH (2003)
Cluster-Buster: finding dense clusters of motifs in DNA sequences
MC Frith et al.
NUCLEIC ACIDS RESEARCH (2003)
Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals
M Uchikawa et al.
DEVELOPMENTAL CELL (2003)
Computational detection and location of transcription start sites in mammalian genomic DNA
TA Down et al.
GENOME RESEARCH (2002)
Initiation of neural induction by FGF signalling before gastrulation
A Streit et al.
NATURE (2000)
SPLASH: structural pattern localization analysis by sequential histograms
A Califano
BIOINFORMATICS (2000)
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
JD Hughes et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: A novel context analysis approach
M Scherf et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
The Eukaryotic Promoter Database (EPD)
RC Perier et al.
NUCLEIC ACIDS RESEARCH (2000)