4.5 Article

Effect of substrate competition in kinetic models of metabolic networks

Journal

FEBS LETTERS
Volume 587, Issue 17, Pages 2818-2824

Publisher

ELSEVIER SCIENCE BV
DOI: 10.1016/j.febslet.2013.06.025

Keywords

Substrate competition; Kinetic rate laws; Modelling; Metabolic pathway

Funding

  1. Research Council of Norway through the Norwegian-German Collaboration Support Scheme [191721]
  2. eVITA program [178885/V30]
  3. German Federal Ministry of Education and Research [BMBF] within the Research Initiative in Systems Biology of Ageing (GerontoSys) [0315591D, 0315890C]
  4. German academic exchange service (DAAD) within the German-Norwegian Collaborative Research Support Scheme

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Substrate competition can be found in many types of biological processes, ranging from gene expression to signal transduction and metabolic pathways. Although several experimental and in silico studies have shown the impact of substrate competition on these processes, it is still often neglected, especially in modelling approaches. Using toy models that exemplify different metabolic pathway scenarios, we show that substrate competition can influence the dynamics and the steady state concentrations of a metabolic pathway. We have additionally derived rate laws for substrate competition in reversible reactions and summarise existing rate laws for substrate competition in irreversible reactions. (C) 2013 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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