4.6 Review

Finding novel pharmaceuticals in the systems biology era using multiple effective drug targets, phenotypic screening and knowledge of transporters: where drug discovery went wrong and how to fix it

Related references

Note: Only part of the references are listed.
Review Pharmacology & Pharmacy

Systems Pharmacology to Predict Drug Toxicity: Integration Across Levels of Biological Organization

Jane P. F. Bai et al.

ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY, VOL 53, 2013 (2013)

Article Biotechnology & Applied Microbiology

A community-driven global reconstruction of human metabolism

Ines Thiele et al.

NATURE BIOTECHNOLOGY (2013)

Review Biochemistry & Molecular Biology

Genetics and iron in the systems biology of Parkinson's disease and some related disorders

Claudia Funke et al.

NEUROCHEMISTRY INTERNATIONAL (2013)

Review Pediatrics

The road from systems biology to systems medicine

Olaf Wolkenhauer et al.

PEDIATRIC RESEARCH (2013)

Review Pharmacology & Pharmacy

Structure and dynamics of molecular networks: A novel paradigm of drug discovery A comprehensive review

Peter Csermely et al.

PHARMACOLOGY & THERAPEUTICS (2013)

Review Pharmacology & Pharmacy

Oral drug delivery utilizing intestinal OATP transporters

Ikumi Tamai

ADVANCED DRUG DELIVERY REVIEWS (2012)

Review Pharmacology & Pharmacy

Novel Computational Approaches to Polypharmacology as a Means to Define Responses to Individual Drugs

Lei Xie et al.

ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY, VOL 52 (2012)

Review Pharmacology & Pharmacy

Systems Pharmacology: Network Analysis to Identify Multiscale Mechanisms of Drug Action

Shan Zhao et al.

ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY, VOL 52 (2012)

Review Pharmacology & Pharmacy

The Expression and Function of Organic Anion Transporting Polypeptides in Normal Tissues and in Cancer

Amanda Obaidat et al.

ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY, VOL 52 (2012)

Review Pharmacology & Pharmacy

Drug Transporters in Drug Efficacy and Toxicity

M. K. DeGorter et al.

ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY, VOL 52 (2012)

Review Pharmacology & Pharmacy

Towards Safer and More Predictable Drug Treatment - Reflections from Studies of the First BCPT Prize Awardee

Pertti J. Neuvonen

BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY (2012)

Article Biochemistry & Molecular Biology

Softening the Rule of Five-where to draw the line?

Joachim Petit et al.

BIOORGANIC & MEDICINAL CHEMISTRY (2012)

Review Biochemical Research Methods

Metabolic network modeling and simulation for drug targeting and discovery

Hyun Uk Kim et al.

BIOTECHNOLOGY JOURNAL (2012)

Article Biochemical Research Methods

Natural product-likeness score revisited: an open-source, open-data implementation

Kalai Vanii Jayaseelan et al.

BMC BIOINFORMATICS (2012)

Article Mathematical & Computational Biology

Improving metabolic flux predictions using absolute gene expression data

Dave Lee et al.

BMC SYSTEMS BIOLOGY (2012)

Review Pharmacology & Pharmacy

Interaction of innovative small molecule drugs used for cancer therapy with drug transporters

K. Mandery et al.

BRITISH JOURNAL OF PHARMACOLOGY (2012)

Review Pharmacology & Pharmacy

OATPs, OATs and OCTs: the organic anion and cation transporters of the SLCO and SLC22A gene superfamilies

Megan Roth et al.

BRITISH JOURNAL OF PHARMACOLOGY (2012)

Editorial Material Pharmacology & Pharmacy

Drug Trafficking: Recent Advances in Therapeutics and Disease

J. A. Sprowl et al.

CLINICAL PHARMACOLOGY & THERAPEUTICS (2012)

Article Pharmacology & Pharmacy

Transporter-Mediated Drug-Drug Interactions Involving OATP Substrates: Predictions Based on In Vitro Inhibition Studies

K. Yoshida et al.

CLINICAL PHARMACOLOGY & THERAPEUTICS (2012)

Editorial Material Pharmacology & Pharmacy

Prediction of Transporter-Mediated Drug-Drug Interactions Using Endogenous Compounds

M. F. Fromm

CLINICAL PHARMACOLOGY & THERAPEUTICS (2012)

Article Pharmacology & Pharmacy

Zebrafish as a Model to Study Drug Transporters at the Blood-Brain Barrier

R. A. Umans et al.

CLINICAL PHARMACOLOGY & THERAPEUTICS (2012)

Editorial Material Pharmacology & Pharmacy

The UCSF-FDA TransPortal: A Public Drug Transporter Database

K. M. Morrissey et al.

CLINICAL PHARMACOLOGY & THERAPEUTICS (2012)

Article Pharmacology & Pharmacy

Highlights from the International Transporter Consortium Second Workshop

M. J. Zamek-Gliszczynski et al.

CLINICAL PHARMACOLOGY & THERAPEUTICS (2012)

Article Medicine, General & Internal

The promise and challenge of personalized medicine: aging populations, complex diseases, and unmet medical need

Adriano M. Henney

CROATIAN MEDICAL JOURNAL (2012)

Article Pharmacology & Pharmacy

Sodium Dependent Multivitamin Transporter (SMVT): A Potential Target for Drug Delivery

Aswani Dutt Vadlapudi et al.

CURRENT DRUG TARGETS (2012)

Article Pharmacology & Pharmacy

Statins as Anti-Inflammatory Agents in Atherogenesis: Molecular Mechanisms and Lessons from the Recent Clinical Trials

Alexios S. Antonopoulos et al.

CURRENT PHARMACEUTICAL DESIGN (2012)

Review Pharmacology & Pharmacy

Expanding the medicinally relevant chemical space with compound libraries

Fabian Lopez-Vallejo et al.

DRUG DISCOVERY TODAY (2012)

Review Pharmacology & Pharmacy

Can we discover pharmacological promiscuity early in the drug discovery process?

Jens-Uwe Peters et al.

DRUG DISCOVERY TODAY (2012)

Review Pharmacology & Pharmacy

Relevance of systems pharmacology in drug discovery

Lourdes Cucurull-Sanchez et al.

DRUG DISCOVERY TODAY (2012)

Review Pharmacology & Pharmacy

Genetic Polymorphisms of OATP Transporters and Their Impact on Intestinal Absorption and Hepatic Disposition of Drugs

Takeo Nakanishi et al.

DRUG METABOLISM AND PHARMACOKINETICS (2012)

Review Pharmacology & Pharmacy

Contribution of tumoral and host solute carriers to clinical drug response

Jason A. Sprowl et al.

DRUG RESISTANCE UPDATES (2012)

Review Pharmacology & Pharmacy

Identifying and characterizing promiscuous targets: Implications for virtual screening

Violeta I. Perez-Nueno et al.

EXPERT OPINION ON DRUG DISCOVERY (2012)

Review Biochemistry & Molecular Biology

Environmental chemicals as substrates, inhibitors or inducers of drug transporters: implication for toxicokinetics, toxicity and pharmacokinetics

Olivier Fardel et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2012)

Review Biochemistry & Molecular Biology

Genetics or environment in drug transport: the case of organic anion transporting polypeptides and adverse drug reactions

John D. Clarke et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2012)

Review Biochemistry & Molecular Biology

Novel models for assessing blood-brain barrier drug permeation

Werner J. Geldenhuys et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2012)

Review Biochemistry & Molecular Biology

Fluoroquinolone disposition: identification of the contribution of renal secretory and reabsorptive drug transporters

Aditi Mulgaonkar et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2012)

Review Biochemistry & Molecular Biology

Impact of drug transporter pharmacogenomics on pharmacokinetic and pharmacodynamic variability - considerations for drug development

Yurong Lai et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2012)

Article Biochemistry & Molecular Biology

Pharmacogenomics of adverse drug reactions: implementing personalized medicine

Chun-Yu Wei et al.

HUMAN MOLECULAR GENETICS (2012)

Article Cardiac & Cardiovascular Systems

Physiological and Pharmacological Roles of Vascular Nucleoside Transporters

Rachel W. S. Li et al.

JOURNAL OF CARDIOVASCULAR PHARMACOLOGY (2012)

Article Chemistry, Medicinal

Drug Effect Prediction by Polypharmacology-Based Interaction Profiling

Zoltan Simon et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2012)

Article Medicine, General & Internal

Using the reconstructed genome-scale human metabolic network to study physiology and pathology

A. Bordbar et al.

JOURNAL OF INTERNAL MEDICINE (2012)

Article Medicine, General & Internal

Systems medicine and metabolic modelling

A. Mardinoglu et al.

JOURNAL OF INTERNAL MEDICINE (2012)

Article Chemistry, Medicinal

Implications of Promiscuous Pim-1 Kinase Fragment Inhibitor Hydrophobic Interactions for Fragment-Based Drug Design

Andrew C. Good et al.

JOURNAL OF MEDICINAL CHEMISTRY (2012)

Article Biochemistry & Molecular Biology

The reconstruction and analysis of tissue specific human metabolic networks

Tong Hao et al.

MOLECULAR BIOSYSTEMS (2012)

Article Biochemistry & Molecular Biology

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation

Aarash Bordbar et al.

MOLECULAR SYSTEMS BIOLOGY (2012)

Article Multidisciplinary Sciences

Chemical genetic discovery of targets and anti-targets for cancer polypharmacology

Arvin C. Dar et al.

NATURE (2012)

Article Multidisciplinary Sciences

Automated design of ligands to polypharmacological profiles

Jeremy Besnard et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML

Georg E. Winter et al.

NATURE CHEMICAL BIOLOGY (2012)

Review Biochemistry & Molecular Biology

Systems metabolic engineering of microorganisms for natural and non-natural chemicals

Jeong Wook Lee et al.

NATURE CHEMICAL BIOLOGY (2012)

Article Chemistry, Multidisciplinary

Quantifying the chemical beauty of drugs

G. Richard Bickerton et al.

NATURE CHEMISTRY (2012)

Article Biotechnology & Applied Microbiology

Finding the sweet spot: the role of nature and nurture in medicinal chemistry

Michael M. Hann et al.

NATURE REVIEWS DRUG DISCOVERY (2012)

Article Cell Biology

Neuroprotection by the multitarget iron chelator M30 on age-related alterations in mice

Lana Kupershmidt et al.

MECHANISMS OF AGEING AND DEVELOPMENT (2012)

Article Chemistry, Multidisciplinary

Physiologically Based Modeling of Pravastatin Transporter-Mediated Hepatobiliary Disposition and Drug-Drug Interactions

Manthena V. S. Varma et al.

PHARMACEUTICAL RESEARCH (2012)

Review Biochemical Research Methods

Systems biology analysis of protein-drug interactions

Jacques Colinge et al.

PROTEOMICS CLINICAL APPLICATIONS (2012)

Review Chemistry, Multidisciplinary

Fragment-based lead design

Olga A. Tarasova et al.

RUSSIAN CHEMICAL REVIEWS (2012)

Article Multidisciplinary Sciences

The Ancient Drug Salicylate Directly Activates AMP-Activated Protein Kinase

Simon A. Hawley et al.

SCIENCE (2012)

Article History & Philosophy Of Science

Epistemic and methodological iteration in scientific research

Kevin C. Elliott

STUDIES IN HISTORY AND PHILOSOPHY OF SCIENCE (2012)

Review Pharmacology & Pharmacy

Functions of OATP1A and 1B transporters in vivo: insights from mouse models

Dilek Iusuf et al.

TRENDS IN PHARMACOLOGICAL SCIENCES (2012)

Review Medicine, Research & Experimental

Virtual Cell: computational tools for modeling in cell biology

Diana C. Resasco et al.

WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2012)

Article Medicine, Research & Experimental

The virtual liver: a multidisciplinary, multilevel challenge for systems biology

Hermann-Georg Holzhuetter et al.

WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2012)

Review Medicine, Research & Experimental

Systems pharmacology, pharmacogenetics, and clinical trial design in network medicine

Elliott Antman et al.

WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2012)

Review Cell Biology

RNAi screening: new approaches, understandings, and organisms

Stephanie E. Mohr et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2012)

Article Genetics & Heredity

Ten Challenges for Systems Medicine

Enrico Capobianco

Frontiers in Genetics (2012)

Review Pharmacology & Pharmacy

Organic cation transporters in the blood-air barrier: expression and implications for pulmonary drug delivery

Johanna Jessica Salomon et al.

THERAPEUTIC DELIVERY (2012)

Review Biochemistry & Molecular Biology

Human Metabolic Network: Reconstruction, Simulation, and Applications in Systems Biology

Ming Wu et al.

METABOLITES (2012)

Review Pharmacology & Pharmacy

The Blood-Testis Barrier and Its Implications for Male Contraception

C. Yan Cheng et al.

PHARMACOLOGICAL REVIEWS (2012)

Article Multidisciplinary Sciences

Systems pharmacology of complex diseases

Jens Hansen et al.

ANIMAL MODELS: THEIR VALUE IN PREDICTING DRUG EFFICACY AND TOXICITY (2011)

Review Pharmacology & Pharmacy

Strategies to Discover Unexpected Targets for Drugs Active at G Protein-Coupled Receptors

John A. Allen et al.

ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY, VOL 51, 2011 (2011)

Editorial Material Biochemistry & Molecular Biology

Metabolites as global regulators: A new view of protein regulation

Xiyan Li et al.

BIOESSAYS (2011)

Article Mathematical & Computational Biology

Parameter estimation in systems biology models using spline approximation

Choujun Zhan et al.

BMC SYSTEMS BIOLOGY (2011)

Article Mathematical & Computational Biology

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

Ines Thiele et al.

BMC SYSTEMS BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Compound Prioritization Methods Increase Rates of Chemical Probe Discovery in Model Organisms

Iain M. Wallace et al.

CHEMISTRY & BIOLOGY (2011)

Article Chemistry, Medicinal

Revisiting the Rule of Five on the Basis of Pharmacokinetic Data from Rat

Lars Ridder et al.

CHEMMEDCHEM (2011)

Article Pharmacology & Pharmacy

Linking Pharmacology to Clinical Reports: Cyclobenzaprine and Its Possible Association With Serotonin Syndrome

J. Mestres et al.

CLINICAL PHARMACOLOGY & THERAPEUTICS (2011)

Article Pharmacology & Pharmacy

Transporter-Mediated Drug Uptake and Efflux: Important Determinants of Adverse Drug Reactions

O. Zolk et al.

CLINICAL PHARMACOLOGY & THERAPEUTICS (2011)

Review Biochemistry & Molecular Biology

Mechanisms for the anti-inflammatory effects of statins

De-xiu Bu et al.

CURRENT OPINION IN LIPIDOLOGY (2011)

Article Biochemistry & Molecular Biology

Structure-based systems biology for analyzing off-target binding

Lei Xie et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)

Article Chemistry, Medicinal

Synthetic and Natural Products as Iron Chelators

Philip C. Sharpe et al.

CURRENT TOPICS IN MEDICINAL CHEMISTRY (2011)

Review Pharmacology & Pharmacy

Evolution of the physicochemical properties of marketed drugs: can history foretell the future?

Bernard Faller et al.

DRUG DISCOVERY TODAY (2011)

Review Pharmacology & Pharmacy

Mapping of pharmacological space

Britta Nisius et al.

EXPERT OPINION ON DRUG DISCOVERY (2011)

Review Biochemistry & Molecular Biology

Drug and metabolite concentrations in tissues in relationship to tissue adverse findings: a review

Mario Pellegatti et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2011)

Review Biochemistry & Molecular Biology

Looking to the Future: Biomarkers in the Management of Pancreatic Adenocarcinoma

Jennifer L. Spratlin et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2011)

Review Pharmacology & Pharmacy

Strategies for bringing drug delivery tools into discovery

Elizabeth Kwong et al.

INTERNATIONAL JOURNAL OF PHARMACEUTICS (2011)

Article Chemistry, Medicinal

Using Consensus-Shape Clustering To Identify Promiscuous Ligands and Protein Targets and To Choose the Right Query for Shape-Based Virtual Screening

Violeta I. Perez-Nueno et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2011)

Article Biochemistry & Molecular Biology

Genome-wide RNAi screens in African trypanosomes identify the nifurtimox activator NTR and the eflornithine transporter AAT6

Nicola Baker et al.

MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2011)

Article Biochemistry & Molecular Biology

Genome-wide RNAi screens in bloodstream form trypanosomes identify drug transporters

Gabriela Schumann Burkard et al.

MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2011)

Editorial Material Chemistry, Medicinal

In Silico Target Profiling of One Billion Molecules

Alfons Nonell-Canals et al.

MOLECULAR INFORMATICS (2011)

Article Chemistry, Medicinal

Ligand Efficiency Indices (LEIs): More than a Simple Efficiency Yardstick

Cele Abad-Zapatero et al.

MOLECULAR INFORMATICS (2011)

News Item Biochemistry & Molecular Biology

SYSTEMS BIOLOGY Metabolites do social networking

Douglas B. Kell

NATURE CHEMICAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Navigating the kinome

James T. Metz et al.

NATURE CHEMICAL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Efficient discovery of anti-inflammatory small-molecule combinations using evolutionary computing

Ben G. Small et al.

NATURE CHEMICAL BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

How were new medicines discovered?

David C. Swinney et al.

NATURE REVIEWS DRUG DISCOVERY (2011)

Article Biotechnology & Applied Microbiology

The influence of the 'organizational factor' on compound quality in drug discovery

Paul D. Leeson et al.

NATURE REVIEWS DRUG DISCOVERY (2011)

Article Biotechnology & Applied Microbiology

Probing the links between in vitro potency, ADMET and physicochemical parameters

M. Paul Gleeson et al.

NATURE REVIEWS DRUG DISCOVERY (2011)

Article Biotechnology & Applied Microbiology

From zero to hero-Design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production

Judith Becker et al.

METABOLIC ENGINEERING (2011)

Article Endocrinology & Metabolism

Mining metabolites: extracting the yeast metabolome from the literature

Chikashi Nobata et al.

METABOLOMICS (2011)

Article Biochemistry & Molecular Biology

ChemProt: a disease chemical biology database

Olivier Taboureau et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

PROMISCUOUS: a database for network-based drug-repositioning

Joachim von Eichborn et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Understanding and Classifying Metabolite Space and Metabolite-Likeness

Julio E. Peironcely et al.

PLOS ONE (2011)

Article Chemistry, Multidisciplinary

Systems Pharmacology: Bridging Systems Biology and Pharmacokinetics-Pharmacodynamics (PKPD) in Drug Discovery and Development

Piet H. van der Graaf et al.

PHARMACEUTICAL RESEARCH (2011)

Review Biotechnology & Applied Microbiology

Systems metabolic engineering for chemicals and materials

Jeong Wook Lee et al.

TRENDS IN BIOTECHNOLOGY (2011)

Review Biochemistry & Molecular Biology

Impact of ion class and time on oral drug molecular properties

Paul D. Leeson et al.

MEDCHEMCOMM (2011)

Review Biochemistry & Molecular Biology

Molecular obesity, potency and other addictions in drug discovery

Michael M. Hann

MEDCHEMCOMM (2011)

Article Medicine, Research & Experimental

Role of systems pharmacology in understanding drug adverse events

Seth I. Berger et al.

WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2011)

Article Mathematical & Computational Biology

Chemical-protein Interactome and Its Application in Off-target Identification

Lun Yang et al.

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES (2011)

Article Biochemical Research Methods

Comparison of Multivariate Data Analysis Strategies for High-Content Screening

Anne Kuemmel et al.

JOURNAL OF BIOMOLECULAR SCREENING (2011)

Review Biochemical Research Methods

The beautiful cell: high-content screening in drug discovery

Marc Bickle

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

The Chemical Basis of Pharmacology

Michael J. Keiser et al.

BIOCHEMISTRY (2010)

Article Biochemical Research Methods

iPHACE: integrative navigation in pharmacological space

Ricard Garcia-Serna et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Compartmentalization of the Edinburgh Human Metabolic Network

Tong Hao et al.

BMC BIOINFORMATICS (2010)

Article Biology

Properties of the Proximate Parameter Tuning Regularization Algorithm

Martin Brown et al.

BULLETIN OF MATHEMATICAL BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Anti-inflammatory Agents: Present and Future

Charles A. Dinarello

Article Pharmacology & Pharmacy

Next-Generation Model-Based Drug Discovery and Development: Quantitative and Systems Pharmacology

S. R. B. Allerheiligen

CLINICAL PHARMACOLOGY & THERAPEUTICS (2010)

Article Pharmacology & Pharmacy

Dissecting Variability in Responses to Cancer Chemotherapy Through Systems Pharmacology

R. Yang et al.

CLINICAL PHARMACOLOGY & THERAPEUTICS (2010)

Review Biochemistry & Molecular Biology

Rational approaches to targeted polypharmacology: creating and navigating protein-ligand interaction networks

James T. Metz et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Expanding the range of 'druggable' targets with natural product-based libraries: an academic perspective

Renato A. Bauer et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2010)

Article Chemistry, Inorganic & Nuclear

Kinetics of iron oxidation upon polyphenol binding

Nathan R. Perron et al.

DALTON TRANSACTIONS (2010)

Review Pharmacology & Pharmacy

Lipophilicity in drug discovery

Michael J. Waring

EXPERT OPINION ON DRUG DISCOVERY (2010)

Review Biochemistry & Molecular Biology

Anticipating drug side effects by comparative pharmacology

Ricard Garcia-Serna et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2010)

Article Chemistry, Medicinal

Model-Free Drug-Likeness from Fragments

Oleg Ursu et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2010)

Editorial Material Biochemistry & Molecular Biology

Reconstruction annotation jamborees: a community approach to systems biology

Ines Thiele et al.

MOLECULAR SYSTEMS BIOLOGY (2010)

Article Biochemistry & Molecular Biology

HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology

Christoph Gille et al.

MOLECULAR SYSTEMS BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions

Aarash Bordbar et al.

MOLECULAR SYSTEMS BIOLOGY (2010)

News Item Biochemistry & Molecular Biology

Fishing for neuroactive compounds

Jeremy L. Jenkins et al.

NATURE CHEMICAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

A predictive model for drug bioaccumulation and bioactivity in Caenorhabditis elegans

Andrew R. Burns et al.

NATURE CHEMICAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Rapid behavior-based identification of neuroactive small molecules in the zebrafish

David Kokel et al.

NATURE CHEMICAL BIOLOGY (2010)

Article Plant Sciences

Natural products in modern life science

Lars Bohlin et al.

PHYTOCHEMISTRY REVIEWS (2010)

Article Multidisciplinary Sciences

Fourier analysis and systems identification of the p53 feedback loop

Naama Geva-Zatorsky et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Small molecules of different origins have distinct distributions of structural complexity that correlate with protein-binding profiles

Paul A. Clemons et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Population robustness arising from cellular heterogeneity

Pawel Paszek et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Inferring Signaling Pathway Topologies from Multiple Perturbation Measurements of Specific Biochemical Species

Tian-Rui Xu et al.

SCIENCE SIGNALING (2010)

Article Cardiac & Cardiovascular Systems

Small Molecule Screening in Zebrafish

David S. Peal et al.

JOURNAL OF CARDIOVASCULAR TRANSLATIONAL RESEARCH (2010)

Article Biochemical Research Methods

Fragment-Based Screening by Biochemical Assays: Systematic Feasibility Studies with Trypsin and MMP12

Andreas Boettcher et al.

JOURNAL OF BIOMOLECULAR SCREENING (2010)

Review Biochemical Research Methods

High-Content Screening: A Decade of Evolution

Nick Thomas

JOURNAL OF BIOMOLECULAR SCREENING (2010)

Article Pharmacology & Pharmacy

Effects of Drug Transporters on Volume of Distribution

Anita Grover et al.

AAPS JOURNAL (2009)

Review Biochemical Research Methods

Network analyses in systems pharmacology

Seth I. Berger et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Siderophore production by marine-derived fungi

Brian Holinsworth et al.

BIOMETALS (2009)

Article Biochemical Research Methods

Physiochemical property space distribution among human metabolites, drugs and toxins

Varun Khanna et al.

BMC BIOINFORMATICS (2009)

Article Biochemical Research Methods

Automated genome mining for natural products

Michael H. T. Li et al.

BMC BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

A Review of the Antioxidant Mechanisms of Polyphenol Compounds Related to Iron Binding

Nathan R. Perron et al.

CELL BIOCHEMISTRY AND BIOPHYSICS (2009)

Review Biochemical Research Methods

Applications of High Content Screening in Life Science Research

Joseph M. Zock

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2009)

Editorial Material Biochemistry & Molecular Biology

Exploring the chemical space of microbial natural products

Hiroyuki Osada et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2009)

Review Chemistry, Medicinal

Implications of the Dominant Role of Transporters in Drug Uptake by Cells

Paul D. Dobson et al.

CURRENT TOPICS IN MEDICINAL CHEMISTRY (2009)

Article Biochemical Research Methods

Automation in High-Content Flow Cytometry Screening

U. Naumann et al.

CYTOMETRY PART A (2009)

Review Pharmacology & Pharmacy

Revealing promiscuous drug-target interactions by chemical proteomics

Marcus Bantscheff et al.

DRUG DISCOVERY TODAY (2009)

Review Pharmacology & Pharmacy

'Metabolite-likeness' as a criterion in the design and selection of pharmaceutical drug libraries

Paul D. Dobson et al.

DRUG DISCOVERY TODAY (2009)

Review Biochemistry & Molecular Biology

Role of membrane transporters in the safety profile of drugs

Edmund Jon Deoon Lee et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2009)

Review Biochemistry & Molecular Biology

Identification of interspecies difference in hepatobiliary transporters to improve extrapolation of human biliary secretion

Yurong Lai

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2009)

Review Biochemistry & Molecular Biology

Physicochemical drug properties associated with in vivo toxicological outcomes: a review

David A. Price et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2009)

Article Chemistry, Medicinal

Chemoinformatic Analysis of Combinatorial Libraries, Drugs, Natural Products, and Molecular Libraries Small Molecule Repository

Narender Singh et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2009)

Article Chemistry, Medicinal

Novel Chemical Space Exploration via Natural Products

Josefin Rosen et al.

JOURNAL OF MEDICINAL CHEMISTRY (2009)

Article Biology

From structure to dynamics: Frequency tuning in the p53-Mdm2 network I. Logical approach

Wassim Abou-Jaoude et al.

JOURNAL OF THEORETICAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Predicting the multi-modal binding propensity of small molecules: towards an understanding of drug promiscuity

Keunwan Park et al.

MOLECULAR BIOSYSTEMS (2009)

Article Biochemistry & Molecular Biology

The topology of drug-target interaction networks: implicit dependence on drug properties and target families

Jordi Mestres et al.

MOLECULAR BIOSYSTEMS (2009)

Review Pharmacology & Pharmacy

Molecular Pharmacology of Promiscuous Seven Transmembrane Receptors Sensing Organic Nutrients

Petrine Wellendorph et al.

MOLECULAR PHARMACOLOGY (2009)

Article Biochemistry & Molecular Biology

Rapid and sustained nuclear-cytoplasmic ERK oscillations induced by epidermal growth factor

Harish Shankaran et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Review Biochemistry & Molecular Biology

Applications of genome-scale metabolic reconstructions

Matthew A. Oberhardt et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Editorial Material Multidisciplinary Sciences

DRUG DISCOVERY Predicting promiscuity

Andrew L. Hopkins

NATURE (2009)

Article Multidisciplinary Sciences

Predicting new molecular targets for known drugs

Michael J. Keiser et al.

NATURE (2009)

Article Biotechnology & Applied Microbiology

Synergistic drug combinations tend to improve therapeutically relevant selectivity

Joseph Lehar et al.

NATURE BIOTECHNOLOGY (2009)

Article Biotechnology & Applied Microbiology

A proteomics approach to discovering natural products and their biosynthetic pathways

Stefanie B. Bumpus et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemistry & Molecular Biology

Bioactivity-guided mapping and navigation of chemical space

Steffen Renner et al.

NATURE CHEMICAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

HMDB: a knowledgebase for the human metabolome

David S. Wishart et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Pulsatile Stimulation Determines Timing and Specificity of NF-κB-Dependent Transcription

Louise Ashall et al.

SCIENCE (2009)

Review Multidisciplinary Sciences

Drug Discovery and Natural Products: End of an Era or an Endless Frontier?

Jesse W. -H. Li et al.

SCIENCE (2009)

Review Immunology

Update on statin-mediated anti-inflammatory activities in atherosclerosis

Fabrizio Montecucco et al.

SEMINARS IN IMMUNOPATHOLOGY (2009)

Review Cardiac & Cardiovascular Systems

The Application of Phenotypic High-Throughput Screening Techniques to Cardiovascular Research

Yoram Etzion et al.

TRENDS IN CARDIOVASCULAR MEDICINE (2009)

Review Pharmacology & Pharmacy

Conciliating binding efficiency and polypharmacology

Jordi Mestres et al.

TRENDS IN PHARMACOLOGICAL SCIENCES (2009)

Review Genetics & Heredity

Systems pharmacology and genome medicine: a future perspective

Aislyn D. Wist et al.

GENOME MEDICINE (2009)

Review Genetics & Heredity

Systems medicine: the future of medical genomics and healthcare

Charles Auffray et al.

GENOME MEDICINE (2009)

Article Biochemical Research Methods

Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks

Yangle Wu et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

A Mapping of Drug Space from the Viewpoint of Small Molecule Metabolism

James Corey Adams et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Endocrinology & Metabolism

Immunomodulatory and Anti-Inflammatory Activities of Statins

Emilia Mira et al.

Endocrine Metabolic & Immune Disorders-Drug Targets (2009)

Article Cardiac & Cardiovascular Systems

Natural products as a robust source of new drugs and drug leads: Past successes and present day issues

Gilbert M. Rishton

AMERICAN JOURNAL OF CARDIOLOGY (2008)

Article Biochemistry & Molecular Biology

Genetic screening for novel Drosophila mutants with discrepancies in iron metabolism

Anuja Mehta et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2008)

Article Biochemical Research Methods

BioBayes: A software package for Bayesian inference in systems biology

Vladislav Vyshemirsky et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte Carlo

Bayu Jayawardhana et al.

BIOINFORMATICS (2008)

Article Chemistry, Medicinal

Pyridyl-phenyl ether monoamine reuptake inhibitors: Impact of lipophilicity on dual SNRI pharmacology and off-target promiscuity

Gavin A. Whitlock et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2008)

Editorial Material Pharmacology & Pharmacy

The state of innovation in drug development

I. Kola

CLINICAL PHARMACOLOGY & THERAPEUTICS (2008)

Article Biochemical Research Methods

A ligand-based approach to mining the chemogenomic space of drugs

Elisabet Gregori-Puigjane et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2008)

Review Biochemical Research Methods

Sloppiness, robustness, and evolvability in systems biology

Bryan C. Daniels et al.

CURRENT OPINION IN BIOTECHNOLOGY (2008)

Review Biochemistry & Molecular Biology

The impact of natural products upon modern drug discovery

A. Ganesan

CURRENT OPINION IN CHEMICAL BIOLOGY (2008)

Review Pharmacology & Pharmacy

Human metabolic network reconstruction and its impact on drug discovery and development

Hongwu Ma et al.

DRUG DISCOVERY TODAY (2008)

Review Pharmacology & Pharmacy

Natural products in drug discovery

Alan L. Harvey

DRUG DISCOVERY TODAY (2008)

Review Biochemistry & Molecular Biology

Interindividual variability in oral antidiabetic drug disposition and response: the role of drug transporter polymorphisms

Michael A. Pacanowski et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2008)

Article Chemistry, Medicinal

Natural product-likeness score and its application for prioritization of compound libraries

Peter Ertl et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2008)

Article Chemistry, Medicinal

Genome mining for novel natural product discovery

Gregory L. Challis

JOURNAL OF MEDICINAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Proximate parameter tuning for biochemical networks with uncertain kinetic parameters

Stephen J. Wilkinson et al.

MOLECULAR BIOSYSTEMS (2008)

Article Biochemistry & Molecular Biology

High-order combination effects and biological robustness

Joseph Lehar et al.

MOLECULAR SYSTEMS BIOLOGY (2008)

Review Biochemistry & Molecular Biology

Scaffold diversity of natural products: inspiration for combinatorial library design

Kristina Grabowski et al.

NATURAL PRODUCT REPORTS (2008)

Review Biochemistry & Molecular Biology

Natural products to drugs: natural product-derived compounds in clinical trials

Mark S. Butler

NATURAL PRODUCT REPORTS (2008)

Editorial Material Multidisciplinary Sciences

A network solution

Adriano Henney et al.

NATURE (2008)

Article Multidisciplinary Sciences

Frequency-modulated nuclear localization bursts coordinate gene regulation

Long Cai et al.

NATURE (2008)

Article Biotechnology & Applied Microbiology

Large-scale chemical dissection of mitochondrial function

Bridget K. Wagner et al.

NATURE BIOTECHNOLOGY (2008)

Article Biotechnology & Applied Microbiology

A quantitative analysis of kinase inhibitor selectivity

Mazen W. Karaman et al.

NATURE BIOTECHNOLOGY (2008)

Article Biotechnology & Applied Microbiology

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

Markus J. Herrgard et al.

NATURE BIOTECHNOLOGY (2008)

Editorial Material Biochemistry & Molecular Biology

Chemical biology and the limits of reductionism

Randall T. Peterson

NATURE CHEMICAL BIOLOGY (2008)

Review Biochemistry & Molecular Biology

Network pharmacology: the next paradigm in drug discovery

Andrew L. Hopkins

NATURE CHEMICAL BIOLOGY (2008)

Review Biotechnology & Applied Microbiology

Opinion - Carrier-mediated cellular uptake of pharmaceutical drugs: an exception or the rule?

Paul D. Dobson et al.

NATURE REVIEWS DRUG DISCOVERY (2008)

Article Medicine, General & Internal

Rosuvastatin to Prevent Vascular Events in Men and Women with Elevated C-Reactive Protein

Paul M. Ridker et al.

NEW ENGLAND JOURNAL OF MEDICINE (2008)

Editorial Material Multidisciplinary Sciences

The virtual physiological human: building a framework for computational biomedicine

Gordon Clapworthy et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES (2008)

Article Multidisciplinary Sciences

Patient-specific simulation as a basis for clinical decision-making

S. Kashif Sadiq et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES (2008)

Article Multidisciplinary Sciences

Protein area occupancy at the center of the red blood cell membrane

Allison D. Dupuy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

News Item Multidisciplinary Sciences

Cholesterol veers off script

Jennifer Couzin

SCIENCE (2008)

Article Multidisciplinary Sciences

Drug target identification using side-effect similarity

Monica Campillos et al.

SCIENCE (2008)

Review Toxicology

Caenorhabditis elegans:: An emerging model in biomedical and environmental toxicology

Maxwell C. K. Leung et al.

TOXICOLOGICAL SCIENCES (2008)

Review Biotechnology & Applied Microbiology

Application of systems biology for bioprocess development

Jin Hwan Park et al.

TRENDS IN BIOTECHNOLOGY (2008)

Review Pharmacology & Pharmacy

Fragment-based approach to drug lead discovery - Overview and advances in various techniques

Daniela Fattori et al.

DRUGS IN R&D (2008)

Article Biochemical Research Methods

Bayesian ranking of biochemical system models

Vladislav Vyshemirsky et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Integrating high-content screening and ligand-target prediction to identify mechanism of action

Daniel W. Young et al.

NATURE CHEMICAL BIOLOGY (2008)

Article Biochemical Research Methods

Accurate automated log Po/w measurement by gradient-flow liquid-liquid partition chromatography Part 1.: Neutral compounds

Sandrine Demare et al.

JOURNAL OF CHROMATOGRAPHY A (2007)

Review Biochemical Research Methods

Drug discovery beyond the 'rule-of-five'

Ming-Qiang Zhang et al.

CURRENT OPINION IN BIOTECHNOLOGY (2007)

Review Pharmacology & Pharmacy

A Sorcerer's apprentice and the rule of five: from rule-of-thumb to commandment and beyond

Cele Abad-Zapatero

DRUG DISCOVERY TODAY (2007)

Article Biotechnology & Applied Microbiology

The influence of drug-like concepts on decision-making in medicinal chemistry

Paul D. Leeson et al.

NATURE REVIEWS DRUG DISCOVERY (2007)

Article Biotechnology & Applied Microbiology

Drug-target network

Muhammed A. Yildirim et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

The Edinburgh human metabolic network reconstruction and its functional analysis

Hongwu Ma et al.

MOLECULAR SYSTEMS BIOLOGY (2007)

Article Multidisciplinary Sciences

Metabolite essentiality elucidates robustness of Escherichia coli metabolism

Pan-Jun Kim et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Ultradian oscillations of Stat, Smad, and Hes1 expression in response to serum

Shigeki Yoshiura et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Automated reverse engineering of nonlinear dynamical systems

Josh Bongard et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Chemistry, Medicinal

Modeling promiscuity based on in vitro safety pharmacology profiling data

Kamal Azzaoui et al.

CHEMMEDCHEM (2007)

Article Multidisciplinary Sciences

Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation

Jin Hwan Park et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Natalie C. Duarte et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Pharmacology & Pharmacy

Fragments, network biology and designing multiple ligands

Richard Morphy et al.

DRUG DISCOVERY TODAY (2007)

Article Biotechnology & Applied Microbiology

Relating protein pharmacology by ligand chemistry

Michael J. Keiser et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

Comparing the chemical spaces of metabolites and available chemicals: models of metabolite-likeness

Sunil Gupta et al.

MOLECULAR DIVERSITY (2007)

Article Biochemical Research Methods

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

Scott A. Becker et al.

NATURE PROTOCOLS (2007)

Review Biochemistry & Molecular Biology

The value of natural products to future pharmaceutical discovery

Dwight D. Baker et al.

NATURAL PRODUCT REPORTS (2007)

Review Chemistry, Medicinal

Fragment-based drug discovery: What has it achieved so fair?

Alexander A. Alex et al.

CURRENT TOPICS IN MEDICINAL CHEMISTRY (2007)

Review Plant Sciences

Natural products as sources of new drugs over the last 25 years

David J. Newman et al.

JOURNAL OF NATURAL PRODUCTS (2007)

Review Biochemistry & Molecular Biology

Oscillations and temporal signalling in cells

G. Tiana et al.

PHYSICAL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Lead-like, drug-like or pub-like: how different are they?

Tudor I. Oprea et al.

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN (2007)

Review Pharmacology & Pharmacy

Multi-target therapeutics: when the whole is greater than the sum of the parts

Grant R. Zimmermann et al.

DRUG DISCOVERY TODAY (2007)

Review Biotechnology & Applied Microbiology

A decade of fragment-based drug design: strategic advances and lessons learned

Philip J. Hajduk et al.

NATURE REVIEWS DRUG DISCOVERY (2007)

Review Biotechnology & Applied Microbiology

Innovation - A robustness-based approach to systems-oriented drug design

Hiroaki Kitano

NATURE REVIEWS DRUG DISCOVERY (2007)

Review Pharmacology & Pharmacy

Systems biology, metabolic modelling and metabolomics in drug discovery and development

Douglas B. Kell

DRUG DISCOVERY TODAY (2006)

Review Endocrinology & Metabolism

Statistical strategies for avoiding false discoveries in metabolomics and related experiments

David I. Broadhurst et al.

METABOLOMICS (2006)

Article Geriatrics & Gerontology

Pharmacology of delayed aging and extended lifespan of Caenorhabditis elegans

James J. Collins et al.

EXPERIMENTAL GERONTOLOGY (2006)

Article Biochemistry & Molecular Biology

Fragment screening: an introduction

Andrew R. Leach et al.

MOLECULAR BIOSYSTEMS (2006)

Article Biotechnology & Applied Microbiology

Global mapping of pharmacological space

Gaia V. Paolini et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemistry & Molecular Biology

TarFisDock: a web server for identifying drug targets with docking approach

Honglin Li et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Chemistry, Medicinal

Dependence of molecular properties on proteomic family for marketed oral drugs

Michal Vieth et al.

JOURNAL OF MEDICINAL CHEMISTRY (2006)

Article Multidisciplinary Sciences

Single-cell proteomic analysis of S-cerevisiae reveals the architecture of biological noise

John R. S. Newman et al.

NATURE (2006)

Article Gastroenterology & Hepatology

Drug and bile acid transporters in rosuvastatin hepatic uptake: Function, expression, and pharmacogenetics

Richard H. Ho et al.

GASTROENTEROLOGY (2006)

Review Pharmacology & Pharmacy

Transporters as a determinant of drug clearance and tissue distribution

Y Shitara et al.

EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES (2006)

Article Biochemistry & Molecular Biology

Can we rationally design promiscuous drugs?

AL Hopkins et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Oscillations and variability in the p53 system

Naama Geva-Zatorsky et al.

MOLECULAR SYSTEMS BIOLOGY (2006)

Review Pharmacology & Pharmacy

Drug discovery from natural sources

Young-Won Chin et al.

AAPS JOURNAL (2006)

Article Chemistry, Medicinal

Visualization and interpretation of high content screening data

A Smellie et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2006)

Article Cell Biology

Systems biology, connectivity and the future of medicine

J van der Greef

IEE PROCEEDINGS SYSTEMS BIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Innovation -: Rescuing drug discovery:: in vivo systems pathology and systems pharmacology

J van der Greef et al.

NATURE REVIEWS DRUG DISCOVERY (2005)

Article Biochemistry & Molecular Biology

Analysis of drug-induced effect patterns to link structure and side effects of medicines

AF Fliri et al.

NATURE CHEMICAL BIOLOGY (2005)

Article Chemistry, Medicinal

Identifying biologically active compound classes using phenotypic screening data and sampling statistics

J Klekota et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2005)

Article Biochemical Research Methods

Systems cell biology knowledge created from high content screening

KA Giuliano et al.

ASSAY AND DRUG DEVELOPMENT TECHNOLOGIES (2005)

Article Biochemical Research Methods

Fast determination of lipophilicity by HPLC

L Ayouni et al.

CHROMATOGRAPHIA (2005)

Article Cell Biology

Synergistic control of oscillations in the NF-κB signalling pathway

AEC Ihekwaba et al.

IEE PROCEEDINGS SYSTEMS BIOLOGY (2005)

Article Computer Science, Artificial Intelligence

Nonlinear system identification using coevolution of models and tests

JC Bongard et al.

IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION (2005)

Article Plant Sciences

Expanding the ChemGPS chemical space with natural products

J Larsson et al.

JOURNAL OF NATURAL PRODUCTS (2005)

Article Biochemical Research Methods

High content screening for G protein-coupled receptors using cell-based protein translocation assays

C Grånäs et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2005)

Review Pharmacology & Pharmacy

Finding the target after screening the phenotype

CP Hart

DRUG DISCOVERY TODAY (2005)

Article Biochemistry & Molecular Biology

Robustness, evolvability, and neutrality

A Wagner

FEBS LETTERS (2005)

Review Biochemistry & Molecular Biology

Protein families and their evolution - A structural perspective

CA Orengo et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2005)

Article Biochemistry & Molecular Biology

High-content screening and profiling of drug activity in an automated centrosome-duplication assay

ZE Perlman et al.

CHEMBIOCHEM (2005)

Article Biotechnology & Applied Microbiology

Magic shotguns versus magic bullets: selectively non-selective drugs for mood disorders and schizophrenia

BL Roth et al.

NATURE REVIEWS DRUG DISCOVERY (2004)

Article Engineering, Industrial

A new accident model for engineering safer systems

N Leveson

SAFETY SCIENCE (2004)

Review Pharmacology & Pharmacy

Predicting undesirable drug interactions with promiscuous proteins in silico

S Ekins

DRUG DISCOVERY TODAY (2004)

Article Genetics & Heredity

Dynamics of the p53-Mdm2 feedback loop in individual cells

G Lahav et al.

NATURE GENETICS (2004)

Article Multidisciplinary Sciences

Chemogenomic profiling: Identifying the functional interactions of small molecules in yeast

G Giaever et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Biochemistry & Molecular Biology

Robustness of cellular functions

J Stelling et al.

Article Biotechnology & Applied Microbiology

Fragment-based lead discovery

DC Rees et al.

NATURE REVIEWS DRUG DISCOVERY (2004)

Review Biochemistry & Molecular Biology

Flow cytometry for high-throughput, high-content screening

BS Edwards et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2004)

Article Biochemical Research Methods

RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells

DB Wheeler et al.

NATURE METHODS (2004)

Article Multidisciplinary Sciences

Oscillations in NF-κB signaling control the dynamics of gene expression

DE Nelson et al.

SCIENCE (2004)

Review Biochemistry & Molecular Biology

Complex phenotypic assays in high-throughput screening

PA Clemons

CURRENT OPINION IN CHEMICAL BIOLOGY (2004)

Review Biotechnology & Applied Microbiology

High content screening applied to large-scale cell biology

VC Abraham et al.

TRENDS IN BIOTECHNOLOGY (2004)

Article Multidisciplinary Sciences

Global analysis of protein expression in yeast

S Ghaemmaghami et al.

NATURE (2003)

Review Biochemical Research Methods

Advances in high content screening for drug discovery

KA Giuliano et al.

ASSAY AND DRUG DEVELOPMENT TECHNOLOGIES (2003)

Review Biochemistry & Molecular Biology

Metabolic pathways in the post-genome era

JA Papin et al.

TRENDS IN BIOCHEMICAL SCIENCES (2003)

Article Chemistry, Multidisciplinary

Property distributions: Differences between drugs, natural products, and molecules from combinatorial chemistry

M Feher et al.

JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES (2003)

Review Biochemistry & Molecular Biology

Stabilization of atherosclerotic plaques: New mechanisms and clinical targets

P Libby et al.

NATURE MEDICINE (2002)

Article Biology

Robustness as a measure of plausibility in models of biochemical networks

M Morohashi et al.

JOURNAL OF THEORETICAL BIOLOGY (2002)

Review Pharmacology & Pharmacy

Prediction of 'drug-likeness'

WP Walters et al.

ADVANCED DRUG DELIVERY REVIEWS (2002)

Article Biochemistry & Molecular Biology

Identification of a class of small molecule inhibitors of the sirtuin family of NAD-dependent deacetylases by phenotypic screening

CM Grozinger et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)

Article Pharmacology & Pharmacy

High content screening - from cells to data to knowledge

C Liptrot

DRUG DISCOVERY TODAY (2001)

Article Biology

Robustness as an evolutionary principle

S Bornholdt et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2000)

Article Multidisciplinary Sciences

Small molecule developmental screens reveal the logic and timing of vertebrate development

RT Peterson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

Article Multidisciplinary Sciences

The segment polarity network is a robust developmental module

G von Dassow et al.

NATURE (2000)

Article Biochemistry & Molecular Biology

De novo design of molecular architectures by evolutionary assembly of drug-derived building blocks

G Schneider et al.

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN (2000)

Review Multidisciplinary Sciences

Drug discovery: A historical perspective

J Drews

SCIENCE (2000)