3.9 Article

Genome Update of Botrytis cinerea Strains B05.10 and T4

Journal

EUKARYOTIC CELL
Volume 11, Issue 11, Pages 1413-1414

Publisher

AMER SOC MICROBIOLOGY
DOI: 10.1128/EC.00164-12

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Funding

  1. Wageningen University

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We report here an update of the Botrytis cinerea strains B05.10 and T4 genomes, as well as an automated preliminary gene structure annotation. High-coverage de novo assemblies and reference-based alignments led to a correction of wrong base calls, elimination of sequence gaps, and improved joining of contigs. The new assemblies have substantially lower numbers of scaffolds and a concomitant increase in the N-50. The list of protein-coding genes was generated using the evidence-driven gene predictor Augustus, with expressed sequence tag evidence and RNA-Seq data as input.

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