4.6 Review

Methane, microbes and models: fundamental understanding of the soil methane cycle for future predictions

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Evidence of Microbial Regulation of Biogeochemical Cycles from a Study on Methane Flux and Land Use Change

Loic Nazaries et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Microbiology

Methylomarinum vadi gen. nov., sp nov., a methanotroph isolated from two distinct marine environments

Hisako Hirayama et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Review Environmental Sciences

Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies

Adrian Ho et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2013)

Article Biodiversity Conservation

Do nitrogen fertilizers stimulate or inhibit methane emissions from rice fields?

Kamaljit Banger et al.

GLOBAL CHANGE BIOLOGY (2012)

Article Biodiversity Conservation

Increasing soil methane sink along a 120-year afforestation chronosequence is driven by soil moisture

David Hiltbrunner et al.

GLOBAL CHANGE BIOLOGY (2012)

Article Microbiology

Methylomonas koyamae sp nov., a type I methane-oxidizing bacterium from floodwater of a rice paddy field

Takuya Ogiso et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)

Review Geochemistry & Geophysics

Emerging Topics in Marine Methane Biogeochemistry

David L. Valentine

ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)

Article Biochemistry & Molecular Biology

A new intra-aerobic metabolism in the nitrite-dependent anaerobic methane-oxidizing bacterium Candidatus 'Methylomirabilis oxyfera'

Ming L. Wu et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2011)

Review Microbiology

Facultative methanotrophy: false leads, true results, and suggestions for future research

Jeremy D. Semrau et al.

FEMS MICROBIOLOGY LETTERS (2011)

Article Microbiology

Methanoregula formicica sp. nov., a methane-producing archaeon isolated from methanogenic sludge

Yuto Yashiro et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)

Article Microbiology

Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog

Suzanna L. Braeuer et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)

Article Microbiology

Methylovulum miyakonense gen. nov., sp. nov., a type I methanotroph isolated from forest soil

Hiroyuki Iguchi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)

Article Microbiology

Methyloferula stellata gen. nov., sp nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase

Alexey V. Vorobev et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Increased soil emissions of potent greenhouse gases under increased atmospheric CO2

Kees Jan van Groenigen et al.

NATURE (2011)

Article Multidisciplinary Sciences

Microbial methane production in oxygenated water column of an oligotrophic lake

Hans-Peter Grossart et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Green & Sustainable Science & Technology

Interactions between nitrogenous fertilizers and methane cycling in wetland and upland soils

Paul L. E. Bodelier

CURRENT OPINION IN ENVIRONMENTAL SUSTAINABILITY (2011)

Article Agriculture, Multidisciplinary

Methane emission from rice fields as affected by land use change

Moniruzzaman Khan Eusufzai et al.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2010)

Article Biotechnology & Applied Microbiology

Methanotrophic Communities in Brazilian Ferralsols from Naturally Forested, Afforested, and Agricultural Sites

Nicole Doerr et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Microbiology

Methanocella arvoryzae sp nov., a hydrogenotrophic methanogen isolated from rice field soil

Sanae Sakai et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)

Article Microbiology

Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa

Peter F. Dunfield et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)

Article Multidisciplinary Sciences

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

Katharina F. Ettwig et al.

NATURE (2010)

Review Microbiology

Microorganisms and climate change: terrestrial feedbacks and mitigation options

Brajesh K. Singh et al.

NATURE REVIEWS MICROBIOLOGY (2010)

Review Astronomy & Astrophysics

The chemical biology of methanogenesis

James G. Ferry

PLANETARY AND SPACE SCIENCE (2010)

Review Biochemistry & Molecular Biology

When metagenomics meets stable-isotope probing: progress and perspectives

Yin Chen et al.

TRENDS IN MICROBIOLOGY (2010)

Review Microbiology

Methanotrophs and copper

Jeremy D. Semrau et al.

FEMS MICROBIOLOGY REVIEWS (2010)

Review Microbiology

Anaerobic Oxidation of Methane: Progress with an Unknown Process

Katrin Knittel et al.

ANNUAL REVIEW OF MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Correlation of Methane Production and Functional Gene Transcriptional Activity in a Peat Soil

Thomas E. Freitag et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Enrichment and Molecular Detection of Denitrifying Methanotrophic Bacteria of the NC10 Phylum

Katharina F. Ettwig et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Microbiology

Methanosphaerula palustris gen. nov., sp nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland

Hinsby Cadillo-Quiroz et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2009)

Review Microbiology

Electron transfer in syntrophic communities of anaerobic bacteria and archaea

Alfons J. M. Stams et al.

NATURE REVIEWS MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

Improved Attribution of Climate Forcing to Emissions

Drew T. Shindell et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Manganese- and Iron-Dependent Marine Methane Oxidation

Emily J. Beal et al.

SCIENCE (2009)

Review Environmental Sciences

Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia

Huub J. M. Op den Camp et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2009)

Review Environmental Sciences

The global methane cycle: recent advances in understanding the microbial processes involved

Ralf Conrad

ENVIRONMENTAL MICROBIOLOGY REPORTS (2009)

Review Environmental Sciences

The quest for atmospheric methane oxidizers in forest soils

Steffen Kolb

ENVIRONMENTAL MICROBIOLOGY REPORTS (2009)

Article Microbiology

Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea

Yuchen Liu et al.

INCREDIBLE ANAEROBES: FROM PHYSIOLOGY TO GENOMICS TO FUELS (2008)

Article Microbiology

Methane as fuel for anaerobic microorganisms

Rudolf K. Thauer et al.

INCREDIBLE ANAEROBES: FROM PHYSIOLOGY TO GENOMICS TO FUELS (2008)

Article Ecology

Thermal adaptation of soil microbial respiration to elevated temperature

Mark A. Bradford et al.

ECOLOGY LETTERS (2008)

Article Biodiversity Conservation

Soil type links microbial colonization of rice roots to methane emission

Ralf Conrad et al.

GLOBAL CHANGE BIOLOGY (2008)

Article Microbiology

Methanolinea tarda gen. nov., sp nov., a methane-producing archaeon isolated from a methanogenic digester sludge

Hiroyuki Imachi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

Jennifer F. Biddle et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum

Tajul Islam et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia

Peter F. Dunfield et al.

NATURE (2007)

Article Multidisciplinary Sciences

Methanotrophy below pH1 by a new Verrucomicrobia species

Arjan Pol et al.

NATURE (2007)

Article Agriculture, Multidisciplinary

Measured and modelled estimates of nitrous oxide emission and methane consumption from a sheep-grazed pasture

S. Saggar et al.

AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2007)

Article Microbiology

Effect of temperature on composition of the methanotrophic community in rice field and forest soil

Santosh R. Mohanty et al.

FEMS MICROBIOLOGY ECOLOGY (2007)

Article Biotechnology & Applied Microbiology

Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria

Brajesh K. Singh et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I

Sanae Sakai et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Chemistry, Multidisciplinary

Oceanic methane biogeochemistry

William S. Reeburgh

CHEMICAL REVIEWS (2007)

Article Biotechnology & Applied Microbiology

Clonothrix fusca Roze 1896, a filamentous, sheathed, methanotrophic gamma-proteobacterium

Giovanni Vigliotta et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Biochemistry & Molecular Biology

The biochemistry of methane oxidation

Amanda S. Hakemian et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2007)

Article Multidisciplinary Sciences

Biodiversity and ecosystem stability in a decade-long grassland experiment

David Tilman et al.

NATURE (2006)

Article Multidisciplinary Sciences

A microbial consortium couples anaerobic methane oxidation to denitrification

AA Raghoebarsing et al.

NATURE (2006)

Article Multidisciplinary Sciences

Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase

K Stoecker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biotechnology & Applied Microbiology

Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils

SR Mohanty et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Review Biochemical Research Methods

Rice Cluster I methanogens, an important group of Archaea producing greenhouse gas in soil

Ralf Conrad et al.

CURRENT OPINION IN BIOTECHNOLOGY (2006)

Article Microbiology

Methylocella species are facultatively methanotrophic

SN Dedysh et al.

JOURNAL OF BACTERIOLOGY (2005)

Article Soil Science

Effect of tree species on methane and ammonium oxidation capacity in forest soils

DS Reay et al.

SOIL BIOLOGY & BIOCHEMISTRY (2005)

Article Geosciences, Multidisciplinary

Gaia's breath - global methane exhalations

KA Kvenvolden et al.

MARINE AND PETROLEUM GEOLOGY (2005)

Review Biochemistry & Molecular Biology

Biological methane oxidation: Regulation, biochemistry, and active site structure of particulate methane monooxygenase

RL Lieberman et al.

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2004)

Article Microbiology

Community analysis of methanogenic archaea within a riparian flooding gradient

D Kemnitz et al.

ENVIRONMENTAL MICROBIOLOGY (2004)

Review Microbiology

Nitrogen as a regulatory factor of methane oxidation in soils and sediments

PLE Bodelier et al.

FEMS MICROBIOLOGY ECOLOGY (2004)

Article Soil Science

Modelling nitrous oxide emissions from dairy-grazed pastures

S Saggar et al.

NUTRIENT CYCLING IN AGROECOSYSTEMS (2004)

Article Geosciences, Multidisciplinary

Impacts of climate change on methane emissions from wetlands

DT Shindell et al.

GEOPHYSICAL RESEARCH LETTERS (2004)

Article Microbiology

Methylocella silvestris sp nov., a novel methanotroph isolated from an acidic forest cambisol

PF Dunfield et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2003)

Article Soil Science

Interactive effects of tree species and soil moisture on methane consumption

OV Menyailo et al.

SOIL BIOLOGY & BIOCHEMISTRY (2003)

Article Biotechnology & Applied Microbiology

Diversity and activity of methanotrophic bacteria in different upland soils

C Knief et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Review Microbiology

Biology of extremophilic and extremotolerant methanotrophs

YA Trotsenko et al.

ARCHIVES OF MICROBIOLOGY (2002)

Article Meteorology & Atmospheric Sciences

Regional inventory of nitric oxide and nitrous oxide emissions for forest soils of southeast Germany using the biogeochemical model PnET-N-DNDC

K Butterbach-Bahl et al.

JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES (2001)

Article Soil Science

Five pesticides decreased oxidation of atmospheric methane in a forest soil

A Priemé et al.

SOIL BIOLOGY & BIOCHEMISTRY (2001)

Article Biodiversity Conservation

Influence of atmospheric CO2 enrichment on methane consumption in a temperate forest soil

RL Phillips et al.

GLOBAL CHANGE BIOLOGY (2001)

Review Ecology

Production, oxidation, emission and consumption of methane by soils: A review

J Le Mer et al.

EUROPEAN JOURNAL OF SOIL BIOLOGY (2001)

Review Soil Science

Modeling trace gas emissions from agricultural ecosystems

CS Li

NUTRIENT CYCLING IN AGROECOSYSTEMS (2000)

Article Multidisciplinary Sciences

A marine microbial consortium apparently mediating anaerobic oxidation of methane

A Boetius et al.

NATURE (2000)

Article Multidisciplinary Sciences

Detection and classification of atmospheric methane oxidizing bacteria in soil

ID Bull et al.

NATURE (2000)

Article Biotechnology & Applied Microbiology

Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane

T Henckel et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)