Related references
Note: Only part of the references are listed.The automatic annotation of bacterial genomes
Emily J. Richardson et al.
BRIEFINGS IN BIOINFORMATICS (2013)
MicroScope-an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
David Vallenet et al.
NUCLEIC ACIDS RESEARCH (2013)
Evaluating bacterial gene-finding HMM structures as probabilistic logic programs
Soren Mork et al.
BIOINFORMATICS (2012)
VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data
Elena S. Peterson et al.
BMC GENOMICS (2012)
Noncoding RNAs Binding to the Nucleoid Protein HU in Escherichia coli
Mirjana Macvanin et al.
JOURNAL OF BACTERIOLOGY (2012)
Analysis of the Regulated Transcriptome of Neisseria meningitidis in Human Blood Using a Tiling Array
Elena Del Tordello et al.
JOURNAL OF BACTERIOLOGY (2012)
Dual RpoH Sigma Factors and Transcriptional Plasticity in a Symbiotic Bacterium
Melanie J. Barnett et al.
JOURNAL OF BACTERIOLOGY (2012)
The tomato genome sequence provides insights into fleshy fruit evolution
Shusei Sato et al.
NATURE (2012)
Sinorhizobium meliloti Sigma Factors RpoE1 and RpoE4 Are Activated in Stationary Phase in Response to Sulfite
Benedicte Bastiat et al.
PLOS ONE (2012)
BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data
Pablo Pareja-Tobes et al.
PLOS ONE (2012)
Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens
Ina Wilms et al.
RNA BIOLOGY (2012)
Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
Pierre Nicolas et al.
SCIENCE (2012)
Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics
Sarah Frank et al.
ENVIRONMENTAL MICROBIOLOGY (2011)
The genome of Tetranychus urticae reveals herbivorous pest adaptations
Miodrag Grbic et al.
NATURE (2011)
The genome of Theobroma cacao
Xavier Argout et al.
NATURE GENETICS (2011)
cis-Antisense RNA, Another Level of Gene Regulation in Bacteria
Jens Georg et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)
Transcription Reprogramming during Root Nodule Development in Medicago truncatula
Sandra Moreau et al.
PLOS ONE (2011)
Sequencing Illustrates the Transcriptional Response of Legionella pneumophila during Infection and Identifies Seventy Novel Small Non-Coding RNAs
Barbara A. Weissenmayer et al.
PLOS ONE (2011)
A high resolution map of a cyanobacterial transcriptome
Vikram Vijayan et al.
GENOME BIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
Jan-Philip Schlueter et al.
BMC GENOMICS (2010)
The role of sigma factor RpoH1 in the pH stress response of Sinorhizobium meliloti
Daniella K. C. de Lucena et al.
BMC MICROBIOLOGY (2010)
Strand-specific deep sequencing of the transcriptome
Ana P. Vivancos et al.
GENOME RESEARCH (2010)
Structural and operational complexity of the Geobacter sulfurreducens genome
Yu Qiu et al.
GENOME RESEARCH (2010)
Dual Control of Sinorhizobium meliloti RpoE2 Sigma Factor Activity by Two PhyR-Type Two-Component Response Regulators
Benedicte Bastiat et al.
JOURNAL OF BACTERIOLOGY (2010)
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
J. Mark Cock et al.
NATURE (2010)
The primary transcriptome of the major human pathogen Helicobacter pylori
Cynthia M. Sharma et al.
NATURE (2010)
Comprehensive comparative analysis of strand-specific RNA sequencing methods
Joshua Z. Levin et al.
NATURE METHODS (2010)
RpoE2 of Sinorhizobium meliloti is necessary for trehalose synthesis and growth in hyperosmotic media
Maud Flechard et al.
MICROBIOLOGY-SGM (2010)
Differentiation of Symbiotic Cells and Endosymbionts in Medicago truncatula Nodulation Are Coupled to Two Transcriptome-Switches
Nicolas Maunoury et al.
PLOS ONE (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
Mechanisms for activating bacterial RNA polymerase
Tamaswati Ghosh et al.
FEMS MICROBIOLOGY REVIEWS (2010)
Stability of the pstS transcript of Escherichia coli
Meire Aguena et al.
ARCHIVES OF MICROBIOLOGY (2009)
Sinorhizobium meliloti rpoE2 is necessary for H(2)O(2) stress resistance during the stationary growth phase
Maud Flechard et al.
FEMS MICROBIOLOGY LETTERS (2009)
Identification of a Hydroxyproline Transport System in the Legume Endosymbiont Sinorhizobium meliloti
Allyson M. MacLean et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2009)
The transcription unit architecture of the Escherichia coli genome
Byung-Kwan Cho et al.
NATURE BIOTECHNOLOGY (2009)
Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011
Claudio Valverde et al.
BMC GENOMICS (2008)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
Genome annotation in plants and fungi:: EuGene as a model platform
Sylvain Foissac et al.
CURRENT BIOINFORMATICS (2008)
Auxotrophy Accounts for Nodulation Defect of Most Sinorhizobium meliloti Mutants in the Branched-Chain Amino Acid Biosynthesis Pathway
Maria de Las Nieves Peltzer et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2008)
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
F. Martin et al.
NATURE (2008)
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
Pierre Abad et al.
NATURE BIOTECHNOLOGY (2008)
The model legume Medicago truncatula A17 is poorly matched for N(2) fixation with the sequenced microsymbiont Sinorhizobium meliloti 1021
Jason J. Terpolilli et al.
NEW PHYTOLOGIST (2008)
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021
Vincent M. Ulve et al.
BMC GENOMICS (2007)
Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics
Coral del Val et al.
MOLECULAR MICROBIOLOGY (2007)
Conrad: Gene prediction using conditional random fields
David DeCaprio et al.
GENOME RESEARCH (2007)
An extracytoplasmic function sigma factor acts as a general stress response regulator in Sinorhizobium meliloti
Laurent Sauviac et al.
JOURNAL OF BACTERIOLOGY (2007)
Identifying bacterial genes and endosymbiont DNA with Glimmer
Arthur L. Delcher et al.
BIOINFORMATICS (2007)
Global discriminative learning for higher-accuracy computational gene prediction
Axel Bernal et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Regulatory mechanisms employed by cis-encoded antisense RNAs
Sabine Brantl
CURRENT OPINION IN MICROBIOLOGY (2007)
Promoter prediction in the rhizobia
Shawn R. MacLellan et al.
MICROBIOLOGY-SGM (2006)
Investigations of Rhizobium biofilm formation
NA Fujishige et al.
FEMS MICROBIOLOGY ECOLOGY (2006)
Sinorhizobium meliloti differentiation during symbiosis with alfalfa:: A transcriptomic dissection
D Capela et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2006)
Regulation and properties of PstSCAB, a high-affinity, high-velocity phosphate transport system of Sinorhizobium meliloti
ZC Yuan et al.
JOURNAL OF BACTERIOLOGY (2006)
The expression of a novel antisense gene mediates incompatibility within the large repABC family of alpha-proteobacterial plasmids
SR MacLellan et al.
MOLECULAR MICROBIOLOGY (2005)
Structure and expression of 12-oxophytodienoate reductase (subgroup I) genes in pea, and characterization of the oxidoreductase activities of their recombinant products
H Matsui et al.
MOLECULAR GENETICS AND GENOMICS (2004)
The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers
V Khemici et al.
MOLECULAR MICROBIOLOGY (2004)
Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
CL Andersen et al.
CANCER RESEARCH (2004)
AUGUSTUS: a web server for gene finding in eukaryotes
M Stanke et al.
NUCLEIC ACIDS RESEARCH (2004)
FIX-regulated genes evolved through promoter duplication in Sinorhizobium meliloti
L Ferrières et al.
MICROBIOLOGY-SGM (2004)
EuGene'Hom: a generic similarity-based gene finder using multiple homologous sequences
S Foissac et al.
NUCLEIC ACIDS RESEARCH (2003)
Comparative gene prediction in human and mouse
G Parra et al.
GENOME RESEARCH (2003)
Analysis of differences between Sinorhizobium meliloti 1021 and 2011 strains using the host calcium spiking response
RJ Wais et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2002)
Carbamoyl-phosphate synthetase - Creation of an escape route for ammonia
JB Thoden et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Transcription attenuation associated with bacterial repetitive extragenic BIME elements
O Espéli et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
SGP-1:: Prediction and validation of homologous genes based on sequence alignments
T Wiehe et al.
GENOME RESEARCH (2001)
Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021
D Capela et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
The composite genome of the legume symbiont Sinorhizobium meliloti
F Galibert et al.
SCIENCE (2001)
Medicago truncatula ENOD11:: A novel RPRP-encoding early nodulin gene expressed during mycorrhization in arbuscule-containing cells
EP Journet et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2001)
Computational inference of homologous gene structures in the human genome
RF Yeh et al.
GENOME RESEARCH (2001)
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
DW Selinger et al.
NATURE BIOTECHNOLOGY (2000)