Journal
CROP SCIENCE
Volume 51, Issue 5, Pages 2021-2035Publisher
WILEY
DOI: 10.2135/cropsci2010.11.0641
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Funding
- National Science Foundation [0606461]
- Direct For Biological Sciences
- Division Of Integrative Organismal Systems [0606461] Funding Source: National Science Foundation
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A diverse collection of 409 Asian rice (Oryza sativa L.) accessions originating from 79 countries was fingerprinted with 36 simple sequence repeat (SSR) markers and evaluated for 18 agro-morphological traits. Genetically, the accessions clustered into five ancestral groups (subpopulations), indica, aus, aromatic (Group V), tropical japonica, and temperate japonica, based on model-based structure analysis. Thirty-three accessions with less than 60% ancestry from any single group were identified as admixtures. Canonical discriminant analysis identified eight agro-morphological traits (panicle number per plant, panicle length, plant height, flag leaf width, grain length, width, length: width ratio, and volume) as the main discriminatory characters among the rice accessions and between the subpopulations. Both SSR allele- and phenotypic trait-based analyses indicated a close relationship between aus and indica and similarly between temperate japonica and tropical japonica. The aromatic (Group V) rice represents a distinct small group that is more closely related to tropical japonica based on SSR alleles but to aus and indica based on phenotype. A strong relationship between subpopulations and geographical distribution was observed. This rice diversity panel with the accompanying genetic and phenotypic information provides a valuable foundation for association mapping, understanding the basis of both genotypic and phenotypic differences within and between subpopulations, and rice improvement programs.
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