4.6 Article

A Modified Nonlocal Continuum Electrostatic Model for Protein in Water and Its Analytical Solutions for Ionic Born Models

Journal

COMMUNICATIONS IN COMPUTATIONAL PHYSICS
Volume 13, Issue 1, Pages 174-194

Publisher

GLOBAL SCIENCE PRESS
DOI: 10.4208/cicp.170811.211011s

Keywords

Nonlocal continuum electrostatic models; Poisson dielectric equations; protein-water interface problem; nonlocal ionic Born models

Funding

  1. National Science Foundation, USA [DMS-0921004]
  2. Division Of Mathematical Sciences
  3. Direct For Mathematical & Physical Scien [1226259] Funding Source: National Science Foundation

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A nonlocal continuum electrostatic model, defined as integro-differential equations, can significantly improve the classic Poisson dielectric model, but is too costly to be applied to large protein simulations. To sharply reduce the model's complexity, a modified nonlocal continuum electrostatic model is presented in this paper for a protein immersed in water solvent, and then transformed equivalently as a system of partial differential equations. By using this new differential equation system, analytical solutions are derived for three different nonlocal ionic Born models, where a monoatomic ion is treated as a dielectric continuum ball with point charge either in the center or uniformly distributed on the surface of the ball. These solutions are analytically verified to satisfy the original integro-differential equations, thereby, validating the new differential equation system.

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