4.6 Article

Rapid Perturbation of Free-Energy Landscapes: From In Vitro to In Vivo

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Protein-binding dynamics imaged in a living cell

Yael Phillip et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Single-Molecule mRNA Decay Measurements Reveal Promoter-Regulated mRNA Stability in Yeast

Tatjana Trcek et al.

Article Biochemistry & Molecular Biology

Multistep Kinetics of the U1A-SL2 RNA Complex Dissociation

Divina Anunciado et al.

JOURNAL OF MOLECULAR BIOLOGY (2011)

Article Chemistry, Multidisciplinary

Atomistic Folding Simulations of the Five-Helix Bundle Protein λ6-85

Gregory R. Bowman et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Biochemistry & Molecular Biology

Single-Molecule Fluorescence Measurements of Ribosomal Translocation Dynamics

Chunlai Chen et al.

MOLECULAR CELL (2011)

Article Multidisciplinary Sciences

Probing cellular protein complexes using single-molecule pull-down

Ankur Jain et al.

NATURE (2011)

Review Multidisciplinary Sciences

Molecular chaperones in protein folding and proteostasis

F. Ulrich Hartl et al.

NATURE (2011)

Article Biochemical Research Methods

Visualizing a one-way protein encounter complex by ultrafast single-molecule mixing

Yann Gambin et al.

NATURE METHODS (2011)

Article Biochemical Research Methods

Fast, three-dimensional super-resolution imaging of live cells

Sara A. Jones et al.

NATURE METHODS (2011)

Article Multidisciplinary Sciences

RNA Mimics of Green Fluorescent Protein

Jeremy S. Paige et al.

SCIENCE (2011)

Article Multidisciplinary Sciences

How Fast-Folding Proteins Fold

Kresten Lindorff-Larsen et al.

SCIENCE (2011)

Article Biophysics

Cotranslational Folding Increases GFP Folding Yield

Krastyu G. Ugrinov et al.

BIOPHYSICAL JOURNAL (2010)

Article Biochemistry & Molecular Biology

PcrA Helicase Dismantles RecA Filaments by Reeling in DNA in Uniform Steps

Jeehae Park et al.

Article Biochemistry & Molecular Biology

Decision Making at a Subcellular Level Determines the Outcome of Bacteriophage Infection

Lanying Zeng et al.

Article Biochemistry & Molecular Biology

A Survey of λ Repressor Fragments from Two-State to Downhill Folding

Feng Liu et al.

JOURNAL OF MOLECULAR BIOLOGY (2010)

Article Biochemical Research Methods

Protein folding stability and dynamics imaged in a living cell

Simon Ebbinghaus et al.

NATURE METHODS (2010)

Review Cell Biology

`The HSP70 chaperone machinery: J proteins as drivers of functional specificity

Harm H. Kampinga et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Multidisciplinary Sciences

Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function

Michael A. Thompson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding

Apratim Dhar et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biophysics

Direct Observation of Downhill Folding of λ-Repressor in a Microfluidic Mixer

Stephen J. DeCamp et al.

BIOPHYSICAL JOURNAL (2009)

Article Biochemical Research Methods

Reaching the protein folding speed limit with large, sub-microsecond pressure jumps

Charles Dumont et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

Hybridization kinetics is different inside cells

Ingmar Schoen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Direct observation of barrier-limited folding of BBL by single-molecule fluorescence resonance energy transfer

Fang Huang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations

Frank Noe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Determining protein stability in cell lysates by pulse proteolysis and Western blotting

Moon-Soo Kim et al.

PROTEIN SCIENCE (2009)

Article Multidisciplinary Sciences

Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation

Clifford P. Brangwynne et al.

SCIENCE (2009)

Review Chemistry, Physical

Structures, kinetics, thermodynamics, and biological functions of RNA hairpins

Philip C. Bevilacqua et al.

ANNUAL REVIEW OF PHYSICAL CHEMISTRY (2008)

Article Chemistry, Physical

Downhill dynamics and the molecular rate of protein folding

Feng Liu et al.

CHEMICAL PHYSICS LETTERS (2008)

Article Biochemistry & Molecular Biology

An engineered protein tag for multiprotein labeling in living cells

Arnaud Gautier et al.

CHEMISTRY & BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Spontaneous intersubunit rotation in single ribosomes

Peter V. Cornish et al.

MOLECULAR CELL (2008)

Article Multidisciplinary Sciences

Crowded, cell-like environment induces shape changes in aspherical protein

Dirar Homouz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Correlation of levels of folded recombinant p53 in Escherichia coli with thermodynamic stability in vitro

Sebastian Mayer et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Multidisciplinary Sciences

A natively unfolded yeast prion monomer adopts an ensemble of collapsed and rapidly fluctuating structures

Samrat Mukhopadhyay et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Solvent-tuning the collapse and helix formation time scales of λ*6-85

Charles Dumont et al.

PROTEIN SCIENCE (2006)

Article Biophysics

Modeling Hsp70-mediated protein folding

Bin Hu et al.

BIOPHYSICAL JOURNAL (2006)

Article Chemistry, Multidisciplinary

Ultrafast T-jump in water: Studies of conformation and reaction dynamics at the thermal limit

Hairong Ma et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Review Multidisciplinary Sciences

Review - The fluorescent toolbox for assessing protein location and function

BNG Giepmans et al.

SCIENCE (2006)

Article Chemistry, Multidisciplinary

Exploring the energy landscape of a small RNA hairpin

HR Ma et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Biochemical Research Methods

Fluorescence cross-correlation spectroscopy in living cells

K Bacia et al.

NATURE METHODS (2006)

Article Biochemistry & Molecular Biology

Real-time kinetics of gene activity in individual bacteria

I Golding et al.

Article Biochemical Research Methods

Homogeneous stalled ribosome nascent chain complexes produced in vivo or in vitro

MS Evans et al.

NATURE METHODS (2005)

Review Biology

Downhill protein folding: evolution meets physics

M Gruebele

COMPTES RENDUS BIOLOGIES (2005)

Article Multidisciplinary Sciences

Molecular crowding enhances native state stability and refolding rates of globular proteins

MS Cheung et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Multidisciplinary Sciences

Monitoring protein stability and aggregation in vivo by real-time fluorescent labeling

Z Ignatova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Multidisciplinary Sciences

Folding at the speed limit

WY Yang et al.

NATURE (2003)

Review Multidisciplinary Sciences

Development and use of fluorescent protein markers in living cells

J Lippincott-Schwartz et al.

SCIENCE (2003)

Article Multidisciplinary Sciences

Experimental identification of downhill protein folding

MM Garcia-Mira et al.

SCIENCE (2002)

Article Multidisciplinary Sciences

Slaving: Solvent fluctuations dominate protein dynamics and functions

PW Fenimore et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Quantitative protein stability measurement in vivo

S Ghaemmaghami et al.

NATURE STRUCTURAL BIOLOGY (2001)

Article Multidisciplinary Sciences

Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins

A Ansari et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Multidisciplinary Sciences

Speeding molecular recognition by using the folding funnel: The fly-casting mechanism

BA Shoemaker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

Article Chemistry, Multidisciplinary

Transition from exponential to nonexponential kinetics during formation of a nonbiological helix

WY Yang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2000)

Review Biochemistry & Molecular Biology

Implications of macromolecular crowding for protein assembly

AP Minton

CURRENT OPINION IN STRUCTURAL BIOLOGY (2000)

Review Biochemistry & Molecular Biology

Protein dynamics from NMR

R Ishima et al.

NATURE STRUCTURAL BIOLOGY (2000)