Related references
Note: Only part of the references are listed.Real-time monitoring of RNA helicase activity using fluorescence resonance energy transfer in vitro
Hidenori Tani et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2010)
DNA-polyfluorophore excimers as sensitive reporters for esterases and lipases
Nan Dai et al.
CHEMICAL COMMUNICATIONS (2010)
Fluorescent Analogs of Biomolecular Building Blocks: Design, Properties, and Applications
Renatus W. Sinkeldam et al.
CHEMICAL REVIEWS (2010)
Real-time studies of conformational dynamics of the repair enzyme E. coli formamidopyrimidine-DNA glycosylase and its DNA complexes during catalytic cycle
Vladimir V. Koval et al.
MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS (2010)
Multiple native states reveal persistent ruggedness of an RNA folding landscape
Sergey V. Solomatin et al.
NATURE (2010)
Toward a designed genetic system with biochemical function: polymerase synthesis of single and multiple size-expanded DNA base pairs
Haige Lu et al.
ORGANIC & BIOMOLECULAR CHEMISTRY (2010)
Molecular aptamer beacon for myotonic dystrophy kinase-related Cdc42-binding kinase α
Junie Tok et al.
TALANTA (2010)
Real-Time Monitoring of the Activity and Kinetics of T4 Polynucleotide Kinase by a Singly Labeled DNA-Hairpin Smart Probe Coupled with λ Exonuclease Cleavage
Chen Song et al.
ANALYTICAL CHEMISTRY (2009)
Molecular Engineering of DNA: Molecular Beacons
Kemin Wang et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)
Analysis of Genes, Transcripts, and Proteins via DNA Ligation
Tim Conze et al.
ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (2009)
High-throughput screening assay of hepatitis C virus helicase inhibitors using fluorescence-quenching phenomenon
Hidenori Tani et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2009)
Fluorophore-quencher pair for monitoring protein motion
Deborah C. Tahmassebi et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2009)
Functional Nucleic Acid Sensors
Juewen Liu et al.
CHEMICAL REVIEWS (2009)
Polyfluorophore Labels on DNA: Dramatic Sequence Dependence of Quenching
Yin Nah Teo et al.
CHEMISTRY-A EUROPEAN JOURNAL (2009)
Fluorescence Mapping of the Open Complex of Yeast Mitochondrial RNA Polymerase
Guo-Qing Tang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Evidence for a Tyrosine-Adenine Stacking Interaction and for a Short-lived Open Intermediate Subsequent to Initial Binding of Escherichia coli RNA Polymerase to Promoter DNA
Lisa A. Schroeder et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Polyfluorophores on a DNA Backbone: A Multicolor Set of Labels Excited at One Wavelength
Yin Nah Teo et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)
Coordinating DNA replication by means of priming loop and differential synthesis rate
Manjula Pandey et al.
NATURE (2009)
Highly efficient incorporation of the fluorescent nucleotide analogs tC and tCO by Klenow fragment
Peter Sandin et al.
NUCLEIC ACIDS RESEARCH (2009)
Single molecule measurement of the speed limit'' of DNA polymerase
Jerrod J. Schwartz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Next-Generation DNA Sequencing Methods
Elaine R. Mardis
Annual Review of Genomics and Human Genetics (2008)
Molecular beacons: An optimal multifunctional biological probe
Yongsheng Li et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)
Monitoring helicase activity with molecular beacons
Craig A. Belon et al.
BIOTECHNIQUES (2008)
Twenty-five years of quantitative PCR for gene expression analysis
Heather D. VanGuilder et al.
BIOTECHNIQUES (2008)
Light-switching excimer beacon assays for ribonuclease H kinetic study
Yan Chen et al.
CHEMBIOCHEM (2008)
Functions of base flipping in E. coli nucleotide excision repair
Erik Malta et al.
DNA REPAIR (2008)
Fluorescence of size-expanded DNA bases: Reporting on DNA sequence and structure with an unnatural genetic set
Andrew T. Krueger et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)
Aptamer-based optical probes with separated molecular recognition and signal transduction modules
Na Li et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)
Aptamer switch probe based on intramolecular displacement
Zhiwen Tang et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)
Dynamic binding orientations direct activity of HIV reverse transcriptase
Elio A. Abbondanzieri et al.
NATURE (2008)
Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics
Hari Shroff et al.
NATURE METHODS (2008)
Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP
Julie S. Biteen et al.
NATURE METHODS (2008)
Mechanisms and strategies for effective delivery of antisense and siRNA oligonucleotides
Rudy Juliano et al.
NUCLEIC ACIDS RESEARCH (2008)
Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase
Bettina Theissen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
RNA-templated single-base mutation detection based on T4 DNA ligase and reverse molecular beacon
Hongxing Tang et al.
TALANTA (2008)
Efficient quenching of oligomeric fluorophores on a DNA backbone
James N. Wilson et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
Conformational changes during normal and error-prone incorporation of Nucleotides by a y-family DNA polymerase detected by 2-aminopurine fluorescence
Angela M. DeLucia et al.
BIOCHEMISTRY (2007)
T4 DNA ligase is more than an effective trap of cyclized dsDNA
Chongli Yuan et al.
NUCLEIC ACIDS RESEARCH (2007)
DNA polymerase proofreading: active site switching catalyzed by the bacteriophage T4 DNA polymerase
Elizabeth Fidalgo da Silva et al.
NUCLEIC ACIDS RESEARCH (2007)
Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase
Sua Myong et al.
SCIENCE (2007)
Amplified analysis of low-molecular-weight substrates or proteins by the self-assembly of DNAzyme-aptamer conjugates
Li Di et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
Tagging and detection strategies for activity-based proteomics
Amir M. Sadaghiani et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2007)
Fluorescence imaging in vivo:: recent advances
Jianghong Rao et al.
CURRENT OPINION IN BIOTECHNOLOGY (2007)
Chemical tools for biomolecular imaging
Nils Johnsson et al.
ACS CHEMICAL BIOLOGY (2007)
Fluorescence of 2-aminopurine reveals rapid conformational changes in the RB69 DNA polymerase-primer/template complexes upon binding and incorporation of matched deoxynucleoside triphosphates
H. Zhang et al.
NUCLEIC ACIDS RESEARCH (2007)
Sensitive detection of protein by an aptamer-based label-free fluorescing molecular switch
Bingling Li et al.
CHEMICAL COMMUNICATIONS (2007)
Signaling aptamers created using fluorescent nucleotide analogues
Evaldas Katilius et al.
ANALYTICAL CHEMISTRY (2006)
Sequence-resolved detecton of pausing by single RNA polymerase molecules
Kristina M. Herbert et al.
CELL (2006)
A generic, homogenous method for measuring kinase and inhibitor activity via adenosine 5′-diphosphate accumulation
Neil W. Charter et al.
JOURNAL OF BIOMOLECULAR SCREENING (2006)
Review - The fluorescent toolbox for assessing protein location and function
BNG Giepmans et al.
SCIENCE (2006)
Enzymatic synthesis of fluorescent oligomers assembled on a DNA backbone
YJ Cho et al.
CHEMBIOCHEM (2006)
Multitasking by multivalent circular DNA aptamers
DA Di Giusto et al.
CHEMBIOCHEM (2006)
Analyzing genes using closing and replicating circles
M Nilsson et al.
TRENDS IN BIOTECHNOLOGY (2006)
Real-time assays with molecular beacons and other fluorescent nucleic acid hybridization probes
SAE Marras et al.
CLINICA CHIMICA ACTA (2006)
Hybridase activity of human ribonuclease-1 revealed by a real-time fluorometric assay
Nicoletta Potenza et al.
NUCLEIC ACIDS RESEARCH (2006)
Dual colour, microarray-based, analysis of 10 000 protease substrates
Juan J. Diaz-Mochon et al.
CHEMICAL COMMUNICATIONS (2006)
Solid-phase enzyme activity assay utilizing an entrapped fluorescence-signaling DNA aptamer
Nicholas Rupcich et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2006)
Small-molecule screening made simple for a difficult target with a signaling nucleic acid aptamer that reports on deaminase activity
Nadine H. Elowe et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2006)
Fluorogenic label for biomolecular imaging
Luke D. Lavis et al.
ACS CHEMICAL BIOLOGY (2006)
Effect of protein binding on ultrafast DNA dynamics:: Characterization of a DNA:APE1 complex
S Sen et al.
BIOPHYSICAL JOURNAL (2005)
Light-switching excimer probes for rapid protein monitoring in complex biological fluids
CJ Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Direct observation of base-pair stepping by RNA polymerase
EA Abbondanzieri et al.
NATURE (2005)
Direct observation of the three-state folding of a single protein molecule
C Cecconi et al.
SCIENCE (2005)
A new four-base genetic helix, yDNA, composed of widened benzopyrimidine-purine pairs
AHF Lee et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
Nucleic acid-based fluorescence sensors for detecting proteins
E Heyduk et al.
ANALYTICAL CHEMISTRY (2005)
DNA bending by M.EcoKI methyltransferase is coupled to nucleotide flipping
TJ Su et al.
NUCLEIC ACIDS RESEARCH (2005)
DNA end-directed and processive nuclease activities of the archaeal XPF enzyme
JA Roberts et al.
NUCLEIC ACIDS RESEARCH (2005)
Time-resolved fluorescence of 2-aminopurine as a probe of base flipping in M.HhaI-DNA complexes
RK Neely et al.
NUCLEIC ACIDS RESEARCH (2005)
Proximity extension of circular DNA aptamers with real-time protein detection
DA Di Giusto et al.
NUCLEIC ACIDS RESEARCH (2005)
A DNA-protein nanoengine for On-Demand release and precise delivery of molecules
R Nutiu et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2005)
Activity-based high-throughput screening of enzymes by using a DNA microarray
Y Hu et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2005)
Combinatorial libraries - from solution to 2D microarrays
JJ Diaz-Mochon et al.
CHEMICAL COMMUNICATIONS (2005)
ADP-specific sensors enable universal assay of protein kinase activity
J Srinivasan et al.
CHEMISTRY & BIOLOGY (2004)
Dual FRET molecular beacons for mRNA detection in living cells
PJ Santangelo et al.
NUCLEIC ACIDS RESEARCH (2004)
Using pyrrolo-deoxycytosine to probe RNA/DNA hybrids containing the human immunodeficiency virus type-1 3′ polypurine tract
C Dash et al.
NUCLEIC ACIDS RESEARCH (2004)
Signaling aptamer/protein binding by a molecular light switch complex
YX Jiang et al.
ANALYTICAL CHEMISTRY (2004)
Signaling aptamers for monitoring enzymatic activity and for inhibitor screening
R Nutiu et al.
CHEMBIOCHEM (2004)
A molecular beacon assay for measuring base excision repair activities
A Maksimenko et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)
Direct fluorometric measurement of hepatitis C virus helicase activity
AM Boguszewska-Chachulska et al.
FEBS LETTERS (2004)
Real-time quantitative assay of telomerase activity using the duplex scorpion primer
YP Huang et al.
BIOTECHNOLOGY LETTERS (2004)
To slip or skip, visualizing frameshift mutation dynamics for error-prone DNA polymerases
B Tippin et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Characterization and applications of CataCleave probe in real-time detection assays
JJ Harvey et al.
ANALYTICAL BIOCHEMISTRY (2004)
Modified DNA analogues that sense light exposure with color changes
JM Gao et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
PNA-encoded protease substrate microarrays
N Winssinger et al.
CHEMISTRY & BIOLOGY (2004)
Ultrasensitive detection of protein using an aptamer-based exonuclease protection assay
XL Wang et al.
ANALYTICAL CHEMISTRY (2004)
Molecular beacons
WH Tan et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2004)
A four-base paired genetic helix with expanded size
HB Liu et al.
SCIENCE (2003)
Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment)
V Purohit et al.
BIOCHEMISTRY (2003)
Aptamer-based biosensor arrays for detection and quantification of biological macromolecules
TG McCauley et al.
ANALYTICAL BIOCHEMISTRY (2003)
Structure-switching signaling aptamers
R Nutiu et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)
Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations
SJ Johnson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling
SHJ Mei et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)
Using 2-aminopurine fluorescence to measure incorporation of incorrect nucleotides by wild type and mutant bacteriophage T4 DNA Polymerases
EF da Silva et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase
T Ha et al.
NATURE (2002)
Libraries of composite polyfluors built from fluorescent deoxyribosides
JM Gao et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2002)
Chimeric RNA-DNA molecular beacon assay for ribonuclease H activity
J Rizzo et al.
MOLECULAR AND CELLULAR PROBES (2002)
Evaluating the arrayed primer extension resequencing assay of TP53 tumor suppressor gene
N Tonisson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
ATP-dependent allosteric DNA enzymes
M Levy et al.
CHEMISTRY & BIOLOGY (2002)
Molecular aptamer beacons for real-time protein recognition
JWJ Li et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2002)
Promoter clearance by T7 RNA polymerase - Initial bubble collapse and transcript dissociation monitored by base analog fluorescence
CH Liu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
A new class of homogeneous nucleic acid probes based on specific displacement hybridization
QQ Li et al.
NUCLEIC ACIDS RESEARCH (2002)
Direct measurement of single-stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine
MS Dillingham et al.
BIOCHEMISTRY (2002)
Uracil DNA glycosylase: Insights from a master catalyst
JT Stivers et al.
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2001)
Turning on uracil-DNA glycosylase using a pyrene nucleotide switch
YL Jiang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Duplex Scorpion primers in SNP analysis and FRET applications
A Solinas et al.
NUCLEIC ACIDS RESEARCH (2001)
Aptamer beacons for the direct detection of proteins
N Hamaguchi et al.
ANALYTICAL BIOCHEMISTRY (2001)
Insight into the catalytic mechanism of DNA polymerase β:: Structures of intermediate complexes
JW Arndt et al.
BIOCHEMISTRY (2001)
Fluorescence characterization of the transcription bubble in elongation complexes of T7 RNA polymerase
CH Liu et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Y265H mutator mutant of DNA polymerase β -: Proper geometric alignment is critical for fidelity
AM Shah et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Fluorescent pteridine nucleoside analogs - A window on DNA interactions
ME Hawkins
CELL BIOCHEMISTRY AND BIOPHYSICS (2001)
Pyrene nucleotide as a mechanistic probe: Evidence for a transient abasic site-like intermediate in the bypass of dipyrimidine photoproducts by T7 DNA polymerase
LP Sun et al.
BIOCHEMISTRY (2000)
Molecular enzymology of the EcoRV DNA-(adenine-N6)-methyltransferase:: Kinetics of DNA binding and bending, kinetic mechanism and linear diffusion of the enzyme on DNA
H Gowher et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Analysis of the RNA-editing reaction of ADAR2 with structural and fluorescent analogues of the GluR-B R/G editing site
OM Stephens et al.
BIOCHEMISTRY (2000)
Enhancement of transfection by physical concentration of DNA at the cell surface
D Luo et al.
NATURE BIOTECHNOLOGY (2000)
Using molecular beacons to probe molecular interactions between lactate dehydrogenase and single-stranded DNA
XH Fang et al.
ANALYTICAL CHEMISTRY (2000)
Real-time fluorescence assay for O6-alkylguanine-DNA alkyltransferase
AM Moser et al.
ANALYTICAL BIOCHEMISTRY (2000)
Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence
YVR Reddy et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Extensive central disruption of a four-way junction on binding CCE1 resolving enzyme
AC Déclais et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)