4.8 Article

The Zebrafish Information Network (ZFIN): the zebrafish model organism database

Journal

NUCLEIC ACIDS RESEARCH
Volume 31, Issue 1, Pages 241-243

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/nar/gkg027

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Funding

  1. NATIONAL CENTER FOR RESEARCH RESOURCES [P40RR012546] Funding Source: NIH RePORTER
  2. NCRR NIH HHS [RR/HD 12546, P40 RR012546] Funding Source: Medline

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The Zebrafish Information Network (ZFIN) is a web based community resource that serves as a centralized location for the curation and integration of zebrafish genetic, genomic and developmental data. ZFIN is publicly accessible at http://zfin.org. ZFIN provides an integrated representation of mutants, genes, genetic markers, mapping panels, publications and community contact data. Recent enhancements to ZFIN include: (i) an anatomical dictionary that provides a controlled vocabulary of anatomical terms, grouped by developmental stages, that may be used to annotate and query gene expression data; (ii) gene expression data; (iii) expanded support for genome sequence; (iv) gene annotation using the standardized vocabulary of Gene Ontology ( \GO) terms that can be used to elucidate relationships between gene products in zebrafish and other organisms; and (v) collaborations with other databases (NCBI, Sanger Institute and SWISS-PROT) to provide standardization and interconnections based on shared curation.

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