4.5 Article

Versatile and open software for comparing large genomes

Journal

GENOME BIOLOGY
Volume 5, Issue 2, Pages -

Publisher

BMC
DOI: 10.1186/gb-2004-5-2-r12

Keywords

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Funding

  1. NATIONAL HUMAN GENOME RESEARCH INSTITUTE [ZIAHG200398] Funding Source: NIH RePORTER
  2. NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES [T32GM008715] Funding Source: NIH RePORTER
  3. NATIONAL LIBRARY OF MEDICINE [R01LM006845] Funding Source: NIH RePORTER
  4. NIAID NIH HHS [N01AI15447] Funding Source: Medline
  5. NIGMS NIH HHS [T32 GM08715, T32 GM008715] Funding Source: Medline
  6. NLM NIH HHS [R01 LM006845, R01-LM06845] Funding Source: Medline

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The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evolutionary distances, as demonstrated by applications to multiple genomes. Two new graphical viewing tools provide alternative ways to analyze genome alignments. The new system is the first version of MUMmer to be released as open-source software. This allows other developers to contribute to the code base and freely redistribute the code. The MUMmer sources are available at http://www.tigr.org/software/mummer.

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