Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 58, Issue 1, Pages 190-199Publisher
WILEY
DOI: 10.1002/prot.20288
Keywords
binding-site; conformational superposition; function; pattern; short sequence; statistics; structure
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The three-dimensional environments of ligand binding sites have been derived from the parsing and loading of the PDB entries into a relational database. For each bound molecule the biological assembly of the quaternary structure has been used to determine all contact residues and a fast interactive search and retrieval system has been developed. Prosite pattern and short sequence search options are available together with a novel graphical query generator for inter-residue contacts. The database and its query interface are accessible from the Internet through a web server located at: http://www.ebi.ac.uk/msd-srv/msdsite. (C) 2004 Wiley-Liss, Inc.
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